MOTIF GUI PROGRAMMING !
Hi there. I am a MOTIF GUI Programmer in C language.
After a longer break i have problems with the GCC compiling.
my MOTIF file is named winstack.c
I have the follow code gcc -o newprogram winstack.c -lXm -lXt -lX11
The compilation runs good.
But no executable LINUX... (10 Replies)
I have a Motif Application created with XtVaAppInitialize. I have two field widgets, created with XmCreateTextField. Now when I programmatically change the data in any of the two fields, the widgets don't get refreshed, only after a mouse over.
I have tried anything, from including the "xrefresh"... (4 Replies)
An application was getting built using Motif 1.2 that used come along Solaris 6 OS for compiling and linking. Application is run using Motif 2.1 on Solaris 10 and it is working fine.
Application compilation and linking is working fine on Solaris 10 with Motif 2.1.0 but running the application... (0 Replies)
Hello,
I used to compile and link the code on Solaris 6 using Motif 1.2 (that used to come as part of Operating System)
I would like to use the same version of Motif 1.2 for compilation and linking on Solaris 10. But Solaris 10 has Motif 2.1.0 as default.
Is Motif 1.2 supported on... (0 Replies)
hi all,
I've written a GUI application in Eclipse using SWT. It's running fine on linux(which uses GTK on x86).
But when I ran the same application on AIX(which uses Motif on PPC), the GUI part is suffering. :-(
The checkboxes are looking very small(like tiny dots on screen!) , spinners are... (4 Replies)
Hi everyone, I am new in motif programming and I want to learn how to program it. I use Fedora core 3 and every time I compile the program, there are always some errors appear. One of the errors said that I do not have the Xm/xxxx.h However, I do not know precisely how to install header files. I... (0 Replies)
Can somebody help me...
I have insalled RedHat 7.3 on my computer
and there is motif 2.x and i want to compile a cource code but it doesn't work it says
Xm/PushB.h not found..something like that..
I'm trying like this :
gcc -o x x.c -lXm -lXt -lX11
pleas help me (3 Replies)
Bio::Matrix::PSM::InstanceSite(3pm) User Contributed Perl Documentation Bio::Matrix::PSM::InstanceSite(3pm)NAME
Bio::Matrix::PSM::InstanceSite - A PSM site occurance
SYNOPSIS
use Bio::Matrix::PSM::InstanceSite;
#You can get an InstanceSite object either from a file:
my ($instances,$matrix)=$SomePSMFile->parse_next;
#or from memory
my %params=(seq=>'TATAAT',
id=>"TATAbox1", accession=>'ENSG00000122304', mid=>'TB1',
desc=>'TATA box, experimentally verified in PRM1 gene',
-relpos=>-35, -anchor=>'CHR7', -start=>35000921, -end=>35000926);
#Last 2 arguments are passed to create a Bio::LocatableSeq object
#Anchor shows the coordinates system for the Bio::LocatableSeq object
DESCRIPTION
Abstract interface to PSM site occurrence (PSM sequence match). InstanceSite objects may be used to describe a PSM (See
Bio::Matrix::PSM::SiteMatrix) sequence matches. The usual characteristic of such a match is sequence coordinates, score, sequence and
sequence (gene) identifier- accession number or other id.
This object inherits from Bio::LocatableSeq (which defines the real sequence) and might hold a SiteMatrix object, used to detect the CRE
(cis-regulatory element), or created from this CRE.
While the documentation states that the motif id and gene id (accession) combination should be unique, this is not entirely true- there
might be more than one occurrence of the same cis-regulatory element in the upstream region of the same gene. Therefore relpos would be
the third element to create a really unique combination.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
Description
Bio::Matrix::PSM::InstanceSiteI implementation
AUTHOR - Stefan Kirov
Email skirov@utk.edu
APPENDIX
new
Title : new
Usage : my $isntance=Bio::Matrix::PSM::InstanceSite->new
(-seq=>'TATAAT', -id=>"TATAbox1",
-accession_number='ENSG00000122304', -mid=>'TB1',
-desc=>'TATA box, experimentally verified in PRM1 gene',
-relpos=>-35, -anchor=>'CHR7', -start=>35000921, -end=>35000926, strand=>1)
Function: Creates an InstanceSite object from memory.
Throws :
Example :
Returns : Bio::Matrix::PSM::InstanceSite object
Args : hash
mid
Title : mid
Usage : my $mid=$instance->mid;
Function: Get/Set the motif id
Throws :
Example :
Returns : scalar
Args : scalar
score
Title : score
Usage : my $score=$instance->score;
Function: Get/Set the score (mismatches) between the instance and the attached (or
initial) PSM
Throws :
Example :
Returns : real number
Args : real number
anchor
Title : anchor
Usage : my $anchor=$instance->anchor;
Function: Get/Set the anchor which shows what coordinate system start/end use
Throws :
Example :
Returns : string
Args : string
start
Title : start
Usage : my $start=$instance->start;
Function: Get/Set the position of the instance on the sequence used
Throws :
Example :
Returns : integer
Args : integer
minstance
Title : minstance
Usage : my $minstance=$misntance->score;
Function: Get/Set the unique identifier- sequence id/motif id, for example PRM1_TATAbox.
Not necessarily human readable.
Throws :
Example :
Returns : string
Args : string
relpos
Title : relpos
Usage : my $seqpos=$instance->relpos;
Function: Get/Set the relative position of the instance with respect to the transcription start
site (if known). Can and usually is negative.
Throws :
Example :
Returns : integer
Args : integer
annotation
Title : annotation
Usage : $ann = $seq->annotation or $seq->annotation($annotation)
Function: Gets or sets the annotation
Returns : L<Bio::AnnotationCollectionI> object
Args : None or L<Bio::AnnotationCollectionI> object
See Bio::AnnotationCollectionI and Bio::Annotation::Collection for more information
species
Title : species
Usage : $species = $seq->species() or $seq->species($species)
Function: Gets or sets the species
Returns : L<Bio::Species> object
Args : None or L<Bio::Species> object
See Bio::Species for more information
frame
Title : frame
Usage : my $frane=$instance->frame;
Function: Get/Set the frame of a DNA instance with respect to a protein motif used.
Returns undef if the motif was not protein or the DB is protein.
Throws :
Example :
Returns : integer
Args : integer (0, 1, 2)
perl v5.14.2 2012-03-02 Bio::Matrix::PSM::InstanceSite(3pm)