Hi All,
I am in small problem..
i have one script which transfers some big files to my ftp usign normal command like put ....
my problem is how to check whether my file have been transferred successfully on ftp or not...
i know only inside ftp we have option like 'size' command which... (2 Replies)
I have following script on AIX/KSH
if ] ; then
echo "filename exists and is > 0 bytes"
else
echo "filename does not exist or is zero length"
fi
It is not working. What is wrong here??? (3 Replies)
I want to write a batch job (ksh) with the following requirement
we have file feeds coming to our system from other team,
if the file size is greater than expected then we dont need to process the file for the day
and need to archive the file and send email notification to the manager saying... (5 Replies)
if ; then
cp /tmp/testfolder/*.* ~/new/logs/
else
echo "No files today"
exit
fi
The problem is this doen't work when there is more than 1 file. Please tell me how to
take the latest file and check the size of the file in a directory (1 Reply)
Hi,
Following script work fine:
#!/bin/bash
FILE=$1
if ; then
echo Yay
else
echo Boo
fi
But I would like to add another condition that if FILE... (3 Replies)
I am trying to check whether two files are empty or not using below if condition but its checking for only one file
if ]
Again I tried
if && ]
Need your assistance (2 Replies)
Hi,
I am trying to write a script which will check if the filesize is grather than 0 KB, compress the file and send to the email list else if the file size is zero KB don't send a mail update the log
if
then
echo "Validate the file" | mailx -s " There are errors : " ${EMAIL_LIST}
else... (5 Replies)
Discussion started by: mora
5 Replies
LEARN ABOUT DEBIAN
blastclust
BLASTCLUST(1) NCBI Tools User's Manual BLASTCLUST(1)NAME
blastclust - BLAST score-based single-linkage clustering
SYNOPSIS
blastclust [-] [-C] [-L X] [-S X] [-W N] [-a N] [-b F] [-c filename] [-d filename] [-e F] [-i filename] [-l filename] [-o filename] [-p F]
[-r filename] [-s filename] [-v [filename]]
DESCRIPTION
blastclust automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in
case of proteins or Mega BLAST algorithm for DNA. In the latter case a single Mega BLAST search is performed for all the sequences combined
against a database created from the same sequences. blastclust finds pairs of sequences that have statistically significant matches and
clusters them using single-linkage clustering.
OPTIONS
A summary of options is included below.
- Print usage message
-C Complete unfinished clustering
-L X Length coverage threshold (default = 0.9)
-S X Score coverage threshold (bit score / length if < 3.0, percentage of identities otherwise; default = 1.75)
-W N Use words of size N (length of best perfect match; zero invokes default behavior: 3 for proteins, 32 for nucleotides)
-a N Number of CPU's to use (default = 1)
-b F Do not require coverage on both neighbours
-c filename
Read advanced options from configuration file filename
-d filename
Input as a database
-e F Disable id parsing in database formatting
-i filename
FASTA input file (program will format the database and remove files in the end; default = stdin)
-l filename
Restrict reclustering to id list in filename
-o filename
Output file for list of clusters (default = stdout)
-p F Input is nucleotides, not proteins.
-r filename
Restore neighbors for reclustering from filename
-s filename
Save all neighbours to filename
-v [filename]
Print verbose progress messages (to filename)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO blast(1), formatdb(1), /usr/share/doc/blast2/blastclust.html, <http://www.ncbi.nlm.nih.gov/BLAST/>
NCBI 2004-06-25 BLASTCLUST(1)