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Top Forums Shell Programming and Scripting Bash to verify each line in input for specific pattern Post 302997665 by Don Cragun on Thursday 18th of May 2017 01:49:43 AM
Old 05-18-2017
Your description is rather confusing, I think the following may come closer to doing what you want:
Code:
awk '
NR == 1 {
	next
}
NR % 6 == 2 && /found expected header/ ||
NR % 6 == 3 && /found expected order of fields/ ||
NR % 6 == 4 && /R_Index is a number/ ||
NR % 6 == 5 && /PopFreqMax is valid/ ||
NR % 6 == 0 && /Quality is a character/ ||
NR % 6 == 1 && /HGMD and Sanger are valid/ {
	VAL++
}
NR % 6 == 1 {
	print " " $1, (VAL == 6) ? "is verified" : "is not verified"
	VAL = 0
}
' input.txt > verify.txt

If input.txt contains the sample input you provided in post #5 in this thread, the text produced by the above script in verify.txt exactly matches the output you said you wanted.
 

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RBASH(1)						      General Commands Manual							  RBASH(1)

NAME
rbash - restricted bash, see bash(1) RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow- ing are disallowed or not performed: o changing directories with cd o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV o specifying command names containing / o specifying a file name containing a / as an argument to the . builtin command o specifying a filename containing a slash as an argument to the -p option to the hash builtin command o importing function definitions from the shell environment at startup o parsing the value of SHELLOPTS from the shell environment at startup o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators o using the exec builtin command to replace the shell with another command o adding or deleting builtin commands with the -f and -d options to the enable builtin command o using the enable builtin command to enable disabled shell builtins o specifying the -p option to the command builtin command o turning off restricted mode with set +r or set +o restricted. These restrictions are enforced after any startup files are read. When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script. SEE ALSO
bash(1) GNU Bash-4.0 2004 Apr 20 RBASH(1)
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