I am not sure what you mean by changing the regex, but each file is a block of 6 lines within input.
input.txt (file that has the output of the process)
Code:
Start import validation creation: Wed May 17 06:55:34 CDT 2017 -header-
/home/cmccabe/Desktop/validate/00-0000-l,f.txt found expected header
/home/cmccabe/Desktop/validate/00-0000-l,f.txt found expected order of fields
/home/cmccabe/Desktop/validate/00-0000-l,f.txt R_Index is a number
/home/cmccabe/Desktop/validate/00-0000-l,f.txt PopFreqMax is valid
/home/cmccabe/Desktop/validate/00-0000-l,f.txt Quality is a character
/home/cmccabe/Desktop/validate/00-0000-l,f.txt HGMD and Sanger are valid/home/cmccabe/Desktop/validate/00-0001-l,f.txt found expected header
/home/cmccabe/Desktop/validate/00-0001-l,f.txt found expected order of fields
/home/cmccabe/Desktop/validate/00-0001-l,f.txt R_Index is a number
/home/cmccabe/Desktop/validate/00-0001-l,f.txt PopFreqMax is valid
/home/cmccabe/Desktop/validate/00-0001-l,f.txt Quality is a character
/home/cmccabe/Desktop/validate/00-0001-l,f.txt HGMD and Sanger are valid/home/cmccabe/Desktop/validate/00-0002-l,f.txt found expected header
/home/cmccabe/Desktop/validate/00-0002-l,f.txt found expected order of fields
/home/cmccabe/Desktop/validate/00-0002-l,f.txt R_Index is a number
/home/cmccabe/Desktop/validate/00-0002-l,f.txt PopFreqMax is valid
/home/cmccabe/Desktop/validate/00-0002-l,f.txt Quality is a character
/home/cmccabe/Desktop/validate/00-0002-l,f.txt HGMD and Sanger are valid
End import validation creation: Wed May 17 06:55:34 CDT 2017 -footer-
individual files within input.txt (in this example there are 3, but it is possible to have only 1 or 2)
awk 'NR==2 && /found expected header/{
VAL++
}
NR==3 && /found expected order of fields/{
VAL++
}
NR==4 && /R_Index is a number/{
VAL++
}
NR==5 && /PopFreqMax is valid/{
VAL++
}
NR==6 && /Quality is a character/{
VAL++
}
NR==7 && /HGMD and Sanger are valid/{
VAL++
}
END{
if(VAL==6){
print FILENAME " is verified."
}
}
' input.txt > verify.txt
input.txt is verified --- output for the input file not the individual (is this what you mean by change the regex)?
I changed the NR== to skip the header (not sure if that the best). Also would adding print FILENAME " is not verified." capture any negative results where the files did not meet the expected lines (had different values)?
desired result
Code:
/home/cmccabe/Desktop/validate/00-0000-l,f.txt is verified/home/cmccabe/Desktop/validate/00-0001-l,f.txt is verified
/home/cmccabe/Desktop/validate/00-0002-l,f.txt is verified
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box
--------
Fox-2
--------
UF29
zip42
--------
zf-CW
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--------
Fox
--------
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05-17-2017
.