It's strange that you cannot use cat touch >, I'm not sure what type of environment you are using that disallow you to use those typical commands. Use perl if you can
Hi
I have following list of files at a path:
01.AR.asset
01.AR.index
01.AR.asset.vf
01.AR.asset.xv
I want to rename all these files as follows:
73.AR.asset.Z
73.AR.index.Z
73.AR.asset.vf.Z
73.AR.asset.xv.Z
Can any body give me a single command to acheive the above results.
... (5 Replies)
Let's assume that I have a file name called ‘A' and it has 100 lines in it and would like to split these 100 lines into 4 files as specified bellow.
INPUT: Input file name A
1
2
3
4
5
6
7
8
9
........100
Output: 4 output files (x,y,z,w)
File x should contains (Skip 4 lines)... (15 Replies)
Hi,
I will use below command for grep single string ("osuser" is search string)
ex: find . -type f | xarg grep -il osuser
but i have one more string "v$session"
here i want to grep in which file these two strings are present.
any help is appreciated,
Thanks in advance.
Gagan (2 Replies)
Hi,
I have a requirement with,
No~Dt~Notes
1~2011/08/1~"aaa
bbb
ccc
ddd
eee
fff
ggg
hhh"
Single column alone got splitted into multiple lines.
I require the output as
No~Dt~Notes
1~2011/08/1~"aaa<>bbb<>ccc<>ddd<>eee<>fff<>ggg<>hhh"
mean to say those new lines to be... (1 Reply)
I have a log directory:
/logs/foo.log
/logs/bar.log
/logs/err.out
I'm trying to find a way to
> /logs/*.log
> /logs/*.out
to blank them out, but of course, that doesn't work.
Any suggestions? (4 Replies)
:confused:Hello -- i just joined the forums. I am a complete noob -- only about 1 week into learning how to program anything... and starting with linux.
I am working in Linux terminal.
I have a folder with a bunch of txt files. Each file has several lines of html code. I want to combine... (2 Replies)
Hi All,
I would like to sftp 2 files with a single command. I tried the below options,
sftp suer@test13:"/u01/home/oracle/SetDb.sh /u01/home/oracle/.profile" ./
But what actually happens is
Fetching /u01/home/oracle/SetDb.sh to /u01/home/oracle/.profile
/u01/home/oracle/SetDb.sh ... (3 Replies)
Hello ,
Can anyone please help me to solve the below -
Input.txt
source table abc
col1 char
col2 number
source table bcd
col1 date
col2 char
output should be 2 files based on the row separator "source table"
abc.txt
col1 char (6 Replies)
I am using below code to split files based on blank lines but it does not work.
awk 'BEGIN{i=0}{RS="";}{x="F"++i;}{print > x;}'
Your help would be highly appreciated
find attachment of sample.txt file (2 Replies)
I have multiple files test1, test2, test3 etc. I want to move to a different directory with ABC_ prefixed to every file and and current dat time as postfix using a single command. (I will be using this is sftp with ! (command for local server).
I have tried the following but it gives error
... (5 Replies)
Discussion started by: Soham
5 Replies
LEARN ABOUT DEBIAN
bio::seq::seqfastaspeedfactory
Bio::Seq::SeqFastaSpeedFactory(3pm) User Contributed Perl Documentation Bio::Seq::SeqFastaSpeedFactory(3pm)NAME
Bio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI (or derived class) through a factory
SYNOPSIS
use Bio::Seq::SeqFastaSpeedFactory;
my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
my $seq = $factory->create(-seq => 'WYRAVLC',
-id => 'name');
# If you want the factory to create Bio::Seq objects instead
# of the default Bio::PrimarySeq objects, use the -type parameter:
my $factory = Bio::Seq::SeqFastaSpeedFactory->new(-type => 'Bio::Seq');
DESCRIPTION
This object will build Bio::Seq objects generically.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new();
Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object
Returns : Bio::Seq::SeqFastaSpeedFactory
Args : -type => string, name of a PrimarySeqI derived class
This is optional. Default=Bio::PrimarySeq.
create
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
Function: Instantiates a new Bio::Seq object, correctly built but very
fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
Returns : Bio::Seq
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-id => $name
perl v5.14.2 2012-03-02 Bio::Seq::SeqFastaSpeedFactory(3pm)