I'm new of UNIX shell scripting. I'm recently generating a excel report in UNIX(file with delimiter is fine). How should I make a script to do it?
1 file to join comes from output of one UNIX command, the second from another UNIX command, and third from a database query. The key columes of all... (7 Replies)
Hi,
I'm trying to compare the first column of two files (tab or whitespace delimited, either way's fine, I`ve got both) and print the lines that are identical for the first column of both files. Something like this:
File1
AAA 26 49 7 27 36 33 46 75 73 69
AAAAA 4 10 4 7 10 18 21... (2 Replies)
Hi all,
I searched through the forum but i can't manage to find a solution. I need to join a set of files placed in a directory (~1600) by column, and obtain an output with first and second column common to each file, but following columns are taken from the file in the list (precisely the fourth... (10 Replies)
I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ?
file1
ax100 20 30 40
ax200 22 33 44
file2
ax100 10 20 40
ax200 12 13 44
file2
ax100 0 0 4
ax200 2 3 4 (9 Replies)
Dear Forum,
Full title of the topic would be: "Join 3 or more files using matching column without full list in any of these columns"
I have several, typically 3 or 4 files which I need to join, something like FULL JOIN in slq scripts, all combinations of matches should be printed into an... (3 Replies)
Hi All,
I am trying to join to files based on one common column.
Cat File1
ID HID
Ab_1 23
Cd 45
df 22
Vv 33
Cat File2
ID pval
Ab_1 0.3
Cd 10
Vv 0.0444 (3 Replies)
Hi,
I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column).
I want to write a script to join the files by the first common column so that in the... (5 Replies)
Hi all,
I'm trying to join two .txt file tab delimitated based on a common column.
File 1
transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct
comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00
comp1000297_c0_seq1 ... (1 Reply)
Dear All,
I have many files formatted like this:
file1.txt:
1/2-SBSRNA4 18
A1BG 3
A1BG-AS1 6
A1CF 0
A2LD1 1
A2M 1160
file2.txt
1/2-SBSRNA4 53
A1BG 1
A1BG-AS1 7
A1CF 0
A2LD1 3
A2M 2780 (5 Replies)
Discussion started by: paolo.kunder
5 Replies
LEARN ABOUT HPUX
join
join(1) General Commands Manual join(1)NAME
join - relational database operator
SYNOPSIS
[options] file1 file2
DESCRIPTION
forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 or file2 is the standard
input is used.
file1 and file2 must be sorted in increasing collating sequence (see Environment Variables below) on the fields on which they are to be
joined; normally the first in each line.
The output contains one line for each pair of lines in file1 and file2 that have identical join fields. The output line normally consists
of the common field followed by the rest of the line from file1, then the rest of the line from file2.
The default input field separators are space, tab, or new-line. In this case, multiple separators count as one field separator, and lead-
ing separators are ignored. The default output field separator is a space.
Some of the below options use the argument n. This argument should be a or a referring to either file1 or file2, respectively.
Options
In addition to the normal output,
produce a line for each unpairable line in file n, where n is or
Replace empty output fields by string
s.
Join on field
m of both files. The argument m must be delimited by space characters. This option and the following two are provided for
backward compatibility. Use of the and options ( see below ) is recommended for portability.
Join on field
m of file1.
Join on field
m of file2.
Each output line comprises the fields specified in
list, each element of which has the form where n is a file number and m is a field number. The common field is not printed
unless specifically requested.
Use character
c as a separator (tab character). Every appearance of c in a line is significant. The character c is used as the field sepa-
rator for both input and output.
Instead of the default output,
produce a line only for each unpairable line in file_number, where file_number is or
Join on field
f of file 1. Fields are numbered starting with 1.
Join on field
f of file 2. Fields are numbered starting with 1.
EXTERNAL INFLUENCES
Environment Variables
determines the collating sequence expects from input files.
determines the alternative blank character as an input field separator, and the interpretation of data within files as single and/or multi-
byte characters. also determines whether the separator defined through the option is a single- or multi-byte character.
If or is not specified in the environment or is set to the empty string, the value of is used as a default for each unspecified or empty
variable. If is not specified or is set to the empty string, a default of ``C'' (see lang(5)) is used instead of If any internationaliza-
tion variable contains an invalid setting, behaves as if all internationalization variables are set to ``C'' (see environ(5)).
International Code Set Support
Single- and multi-byte character code sets are supported with the exception that multi-byte-character file names are not supported.
EXAMPLES
The following command line joins the password file and the group file, matching on the numeric group ID, and outputting the login name, the
group name, and the login directory. It is assumed that the files have been sorted in the collating sequence defined by the or environment
variable on the group ID fields.
The following command produces an output consisting all possible combinations of lines that have identical first fields in the two sorted
files sf1 and sf2, with each line consisting of the first and third fields from and the second and fourth fields from
WARNINGS
With default field separation, the collating sequence is that of with the sequence is that of a plain sort.
The conventions of and are incongruous.
Numeric filenames may cause conflict when the option is used immediately before listing filenames.
AUTHOR
was developed by OSF and HP.
SEE ALSO awk(1), comm(1), sort(1), uniq(1).
STANDARDS CONFORMANCE join(1)