hi,
i am getting this error while executing the script with cron:-
COMMON_ROOT=/files/common: is not an identifier
Manual run is ok, not getting any error. (2 Replies)
I use sed and awk. I am not a big expert but to some extent. I have file like this
PFA0165c ctg_6843
PFA0335w ctg_6843 ctg_6871 ctg_6977 ctg_6654 ctg_7052 ctg_6899 ctg_6840 ctg_7202 ctg_6638
PFA0155c ctg_6877 ctg_7169 ctg_7179 ctg_6843 ctg_6871
Now I want output like... (6 Replies)
Hello guys,
I need a script to get the common lines from two files with a criteria that if the first two columns match then I keep the maximum value of the 3rd column.(tab separated columns)
Sample input:
file1:
111 222 0.1
333 444 0.5
555 666 0.4
file 2:
111 222 0.7
555 666... (5 Replies)
Hi all,
This should be very easy but I can't figure it out...
I have a file that looks like this:
@SRR057408.1 FW8Y5CK02R652T length=34
AGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT
+SRR057408.1 FW8Y5CK02R652T length=34
FIIHFF6666?=:88@@@BBD:::?@ABBAAA>8
@SRR057408.2 FW8Y5CK02TBMHV length=52... (1 Reply)
Hello guys,
I need a script to get the common lines from two files with a criteria that if the first two columns match then I keep the maximum value of the 5th column.(tab separated columns) . 3rd and 4th columns corresponds to the row which has highest value for the 5th column.
Sample... (2 Replies)
Hi
I have 2 files with following data
First file,
sp|Q676U5|A16L1_HUMAN,
Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2,
Maximum coiled-coil residue probability: 0.657 in position 163.
Maximum dimeric residue probability: 0.288 in position 163.
... (1 Reply)
Hi,
I have a table to be imported for R as matrix or data.frame but I first need to edit it because I've got several lines with the same identifier (1st column), so I want to sum the each column (2nd -nth) of each identifier (1st column)
The input is for example, after sorted:
K00001 1 1 4 3... (8 Replies)
Hi All,
i have below two files.
FILE:
NAME="/dev/sda" TYPE="disk" SIZE="60G" OWNER="root" GROUP="disk" MODE="brw-rw----" PKNAME="" MOUNTPOINT=""
NAME="/dev/sda1" TYPE="part" SIZE="500M" OWNER="root" GROUP="disk" MODE="brw-rw----" PKNAME="/dev/sda" MOUNTPOINT="/boot"
NAME="/dev/sda2"... (3 Replies)
Discussion started by: balu1234
3 Replies
LEARN ABOUT MOJAVE
textutil_split
textutil::split(n) Text and string utilities, macro processing textutil::split(n)
__________________________________________________________________________________________________________________________________________________NAME
textutil::split - Procedures to split texts
SYNOPSIS
package require Tcl 8.2
package require textutil::split ?0.7?
::textutil::split::splitn string ?len?
::textutil::split::splitx string ?regexp?
_________________________________________________________________DESCRIPTION
The package textutil::split provides commands that split strings by size and arbitrary regular expressions.
The complete set of procedures is described below.
::textutil::split::splitn string ?len?
This command splits the given string into chunks of len characters and returns a list containing these chunks. The argument len
defaults to 1 if none is specified. A negative length is not allowed and will cause the command to throw an error. Providing an
empty string as input is allowed, the command will then return an empty list. If the length of the string is not an entire multiple
of the chunk length, then the last chunk in the generated list will be shorter than len.
::textutil::split::splitx string ?regexp?
This command splits the string and return a list. The string is split according to the regular expression regexp instead of a simple
list of chars. Note that if you parentheses are added into the regexp, the parentheses part of separator will be added into the
result list as additional element. If the string is empty the result is the empty list, like for split. If regexp is empty the
string is split at every character, like split does. The regular expression regexp defaults to "[\t \r\n]+".
BUGS, IDEAS, FEEDBACK
This document, and the package it describes, will undoubtedly contain bugs and other problems. Please report such in the category textutil
of the Tcllib SF Trackers [http://sourceforge.net/tracker/?group_id=12883]. Please also report any ideas for enhancements you may have for
either package and/or documentation.
SEE ALSO
regexp(n), split(n), string(n)
KEYWORDS
regular expression, split, string
CATEGORY
Text processing
textutil 0.7 textutil::split(n)