hi,
i am getting this error while executing the script with cron:-
COMMON_ROOT=/files/common: is not an identifier
Manual run is ok, not getting any error. (2 Replies)
I use sed and awk. I am not a big expert but to some extent. I have file like this
PFA0165c ctg_6843
PFA0335w ctg_6843 ctg_6871 ctg_6977 ctg_6654 ctg_7052 ctg_6899 ctg_6840 ctg_7202 ctg_6638
PFA0155c ctg_6877 ctg_7169 ctg_7179 ctg_6843 ctg_6871
Now I want output like... (6 Replies)
Hello guys,
I need a script to get the common lines from two files with a criteria that if the first two columns match then I keep the maximum value of the 3rd column.(tab separated columns)
Sample input:
file1:
111 222 0.1
333 444 0.5
555 666 0.4
file 2:
111 222 0.7
555 666... (5 Replies)
Hi all,
This should be very easy but I can't figure it out...
I have a file that looks like this:
@SRR057408.1 FW8Y5CK02R652T length=34
AGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT
+SRR057408.1 FW8Y5CK02R652T length=34
FIIHFF6666?=:88@@@BBD:::?@ABBAAA>8
@SRR057408.2 FW8Y5CK02TBMHV length=52... (1 Reply)
Hello guys,
I need a script to get the common lines from two files with a criteria that if the first two columns match then I keep the maximum value of the 5th column.(tab separated columns) . 3rd and 4th columns corresponds to the row which has highest value for the 5th column.
Sample... (2 Replies)
Hi
I have 2 files with following data
First file,
sp|Q676U5|A16L1_HUMAN,
Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2,
Maximum coiled-coil residue probability: 0.657 in position 163.
Maximum dimeric residue probability: 0.288 in position 163.
... (1 Reply)
Hi,
I have a table to be imported for R as matrix or data.frame but I first need to edit it because I've got several lines with the same identifier (1st column), so I want to sum the each column (2nd -nth) of each identifier (1st column)
The input is for example, after sorted:
K00001 1 1 4 3... (8 Replies)
Hi All,
i have below two files.
FILE:
NAME="/dev/sda" TYPE="disk" SIZE="60G" OWNER="root" GROUP="disk" MODE="brw-rw----" PKNAME="" MOUNTPOINT=""
NAME="/dev/sda1" TYPE="part" SIZE="500M" OWNER="root" GROUP="disk" MODE="brw-rw----" PKNAME="/dev/sda" MOUNTPOINT="/boot"
NAME="/dev/sda2"... (3 Replies)
Discussion started by: balu1234
3 Replies
LEARN ABOUT NETBSD
split
SPLIT(1) BSD General Commands Manual SPLIT(1)NAME
split -- split a file into pieces
SYNOPSIS
split [-a suffix_length] [-b byte_count[k|m] | -l line_count -n chunk_count] [file [name]]
DESCRIPTION
The split utility reads the given file and breaks it up into files of 1000 lines each. If file is a single dash or absent, split reads from
the standard input. file itself is not altered.
The options are as follows:
-a Use suffix_length letters to form the suffix of the file name.
-b Create smaller files byte_count bytes in length. If 'k' is appended to the number, the file is split into byte_count kilobyte
pieces. If 'm' is appended to the number, the file is split into byte_count megabyte pieces.
-l Create smaller files line_count lines in length.
-n Split file into chunk_count smaller files.
If additional arguments are specified, the first is used as the name of the input file which is to be split. If a second additional argument
is specified, it is used as a prefix for the names of the files into which the file is split. In this case, each file into which the file is
split is named by the prefix followed by a lexically ordered suffix using suffix_length characters in the range ``a-z''. If -a is not speci-
fied, two letters are used as the suffix.
If the name argument is not specified, 'x' is used.
STANDARDS
The split utility conforms to IEEE Std 1003.1-2001 (``POSIX.1'').
HISTORY
A split command appeared in Version 6 AT&T UNIX.
The -a option was introduced in NetBSD 2.0. Before that, if name was not specified, split would vary the first letter of the filename to
increase the number of possible output files. The -a option makes this unnecessary.
BSD May 28, 2007 BSD