Sorry to bring this thread back again for this trivial thing.
I was testing the awk command you mentioned to pipe the second column of the du output to ls command.
awk command returned the correct dumpfiles (second column) as shown above.
But when I piped it to ls command , it was returning lots of files which weren't expected like .log files, .dmp.gz file,..etc
Last week I was using the command:
' find /directory -mtime -2 -print' and it showed all the files modified within that period. However, now it only displays the directories and not the files modified. The only thing that changed is that I was granted access to some files.
Thanks (2 Replies)
I need to find out the last modified time for the files which are older than 6 months. If I use ls -l, the files which are older than 6 months, I am just getting the day, month and year instead of exact time. I am using Korn shell, and SUN OS.
Thanks in Advance,
Kiran (3 Replies)
Hi ,
I am trying to find out the List of files modified or added aftter installation of any component on SUN solaris box .
But i am not able to do it using ls or find command .
Can somebody help me out ?
Thanks
Sanjay Gupta (2 Replies)
Hi All,
I have a requirement to find out the files which are modified in the last 10 minutes.
I tried the find command with -amin and -mmin options, but its not working on my AIX server.
Can anyone of you could help me.
Thanks in advance for your help.
Raju (3 Replies)
Hi,
I want to modify a filename in AIX by attaching the last modified timestamp. I want the timestamp completely in numerical format (eg:200905081210. yr-2009, mnth - 05, date -08, hr - 12, mins - 10).
For example if the filename is a.log and it was modified on April 6th 2008 at 21.00. I... (16 Replies)
Hello,
I'm pretty stumped, and I don't know why I am not able to redirect the output to the 'graphme' file with the command below in Fedora 18.
tcpdump -l -n -t "tcp == 18" | perl -ane '($s,$j)=split(/,/,$F,2); print "$s\n";' > graphme
In case you're wondering, I was following the example... (2 Replies)
Need help reading file last modified date in format:
Filename (relative path);YYYYMMDDHHMMSS
And then write it back. My idea is to backup it to a text file to restore later.
Checked this command but does not work:
Getting the Last Modification Timestamp of a File with Stat
$ stat -f... (5 Replies)
This should recursively walk through all dirictories and
search for a specified string in all present files, if found
output manicured content (eg some regex) with CAT into
a specified directory (eg /tmp/)
one by one, keeping the original names
This is what I have so far, which seems to... (1 Reply)
Hi,
I would like use the output of my cut command as a variable in my following awk command. Here's what I've written.
cut -f1 info.txt | awk -v i=xargs -F'' '{if($6 == $i) print $20}' summary.txt
Where obviously the 'xargs' doesn't do what I want. How can I pass my cut result to my awk... (3 Replies)
Discussion started by: heyooo
3 Replies
LEARN ABOUT DEBIAN
bp_classify_hits_kingdom
BP_CLASSIFY_HITS_KINGDOM(1p) User Contributed Perl Documentation BP_CLASSIFY_HITS_KINGDOM(1p)NAME
classify_hits_kingdom - classify BLAST hits by taxonomic kingdom
USAGE
classify_hits_kingdom [-i tab_file] [-i second_BLAST_file] [-e evalue_cutoff]
[-t dir_where_TAXONOMY_files_are] [-g gi2taxid]
[-z PATH_TO_zcat] [-v]
DESCRIPTION
Will print out the taxonomic distribution (at the kingdom level) for a set of hits against the NR database. This script assumes you've
done a search against the protein database, you'll have to make minor changes in the gi_taxid part to point to the gi_taxid_nuc.dump file.
This expects BLAST files in tabbed -m9 or -m8 format. Output with -m 8 or use blast2table.pl to convert (or fastam9_to_table.PLS if using
FASTA).
Input values:
-t/--taxonomy directory where the taxonomy .dmp files are (from NCBI)
-g/--gi Location of gi_taxid_prot.dmp (or gi_taxid_nucl.dmp if
the search was against a NT db)
-i/--in The name of the tab delimited -m8/-m9 output files to
process.
-e/--evalue Provide an E-value cutoff for hits to be considered
-z/--zcat Path to the 'zcat' executable, can also be 'gunzip -c'
if no zcat on your system.
Flags
-v/--verbose To turn on verbose messages
-h/--help Display this helpful information
This is intended to be useful starting script, but users may want to customize the output and parameters. Note that I am summarizing the
kingdoms here and Eukaryota not falling into Metazoa, Viridiplantae, or Fungi gets grouped into the general superkingdom Eukaryota. for
simplicity. There are comments in the code directing you to where changes can be made if you wanted to display hits by phylum for example.
Note that you must wipe out the cache file 'gi2class' that is craeed in your directory after making these changes.
AUTHOR
Jason Stajich jason_at_bioperl_dot_org
perl v5.14.2 2012-03-02 BP_CLASSIFY_HITS_KINGDOM(1p)