03-26-2013
In you output samples, the lines in each set of output files are all in the order in which they appeared in the input files. Is that a requirement for your output, or is it just a coincidence in the random numbers used for your example?
With truly random numbers, the output could contain more than one copy of some output lines. Is it a requirement that the output lines be unique?
Last edited by Don Cragun; 03-26-2013 at 08:35 PM..
Reason: added another question
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I've been working on getting a script to take size, dir name and file name variables from an input file and creating the same dir structure along with the file of specific size.
An example of the input file:
size/dirname/filename
2100/JAN_06/12345ABC.TCC
2354/FEB_06/24564XYZ.NOS... (2 Replies)
Discussion started by: nxd25
2 Replies
2. UNIX for Dummies Questions & Answers
I have a directory of files that look like filename 001.ext, filename 002.ext, etc. I'd like to rename the files with unique random numbered names, so that the original filenames are stripped and the files are given a new, random number name. I'm not super new to UNIX, but I don't often use it for... (2 Replies)
Discussion started by: platz
2 Replies
3. Shell Programming and Scripting
Hi,
I've list of files in a directory, which have date stamp value in their names.
ex:
abc_data_20071102.csv,
abc_data_20091221.csv,
abc_data_20100110.csv,
abc_data_20100222.csv,
abc_data_20080620.csv,... etc.,
I need to select and process only files, within the given date... (4 Replies)
Discussion started by: ganapati
4 Replies
4. Shell Programming and Scripting
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
Discussion started by: Xterra
2 Replies
5. Shell Programming and Scripting
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
Discussion started by: Xterra
2 Replies
6. UNIX for Dummies Questions & Answers
Hi,
I would like to get the specific line from the file taking specific coloumn as reference.
Thanks and Regards (1 Reply)
Discussion started by: kkarthik_kaja
1 Replies
7. Shell Programming and Scripting
I have two files with thousands of sequences of different lengths. infile1 contains the actual sequences and infile2 the scores for each A, T, G and C in infile1. Something like this:
infile1:
>HZVJKYI01ECH5R
TTGATGTGCCAGCTGCCGTTGGTGTGCCAA
>HZVJKYI01AQWJ8
GGATATGATGATGAACTGGTTTGGCACACC... (4 Replies)
Discussion started by: Xterra
4 Replies
8. Shell Programming and Scripting
I have two directories Dir_A and Dir_A_Arc. Need help with a shell script.
The shell script needs to take the path to these two directories as parameters $1 and $2.
The script needs to check if any files exist in these directories and if either of the directories are empty then exit... (5 Replies)
Discussion started by: gaurav99
5 Replies
9. UNIX for Beginners Questions & Answers
Hello All,
May i please know how do i ensure my split command would NOT generate incomplete output files like below, the last lines in each file is missing some columns or last line is complete.
split -b 50GB File File_
File_aa
|551|70210203|xxxxxxx|12/22/2010 20:44:58|11/01/2010... (1 Reply)
Discussion started by: Ariean
1 Replies
10. UNIX for Beginners Questions & Answers
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT DEBIAN
unsort
UNSORT(1) BSD General Commands Manual UNSORT(1)
NAME
unsort -- reorder lines in a file in semirandom ways
SYNOPSIS
unsort [-hvrpncmMsz0l] [--help] [--version] [--random] [--heuristic] [--identity] [--concatenate] [--merge] [--merge-random] [--seed integer]
[--zero-terminated] [--null] [--linefeed] [file ...]
DESCRIPTION
unsort prints the lines in the input files (or standard input) in semi-random order. Available algorithms are a Mersenne Twister based PRNG
and a heuristic algorithm that aims to create a subjective even distribution.
Command line options
-h, --help
Display a concise summary of the available options and argument syntax.
-v, --version
Display version and copyright information.
-r, --random
Use the Mersenne Twister based randomization algorithm.
-p, --heuristic
Use the heuristic "shuffling" algorithm which permutes the lines in such a way that they're spread more or less evenly in the output.
This is the default.
-n, --identity
Do not reorder lines in the input. Useful if you just want to merge the files.
-r, --concatenate
Concatenate all input files then apply the shuffling algorithm to the result as a whole.
-m, --merge
Shuffle all input files seperately then merge the result. Equal-sized files will be merged in the order in which they appear on the
command line.
-M, --merge-random
Shuffle all input files seperately then merge the result. Equal-sized files will be merged in random order. This is the default.
-s, --seed integer
Use this integer as a seed, instead of random data from the environment.
-z, --zero-terminated, -0, --null
Lines are terminated with a character.
-l, --linefeed
Lines are terminated with a
character. This is the default.
SEE ALSO
sort(1)
Free Software June 1, 2019 Free Software