Here is an example how you could cycle and compare array elements (example with integers) and print only those from array 1, which are not in array 2:
Code:
$ cat ./mach.ksh
#!/usr/bin/ksh
set -A ARR1 4 1 3 2
set -A ARR2 5 6 2 7 4 8
MAX=$((${#ARR2[*]}-1))
for a in ${ARR1[*]}; do
COUNT=0
set -A HITS
for b in ${ARR2[*]}; do
(( $a != $b )) && \
HITS[$COUNT]=$a && \
let COUNT+=1
done
(( ${#HITS[*]} != $MAX )) && \
print ${HITS[0]}
unset HITS
done
exit 0
$ ./mach.ksh
1
3
Somehow there is a blank line at the end. Didn't find where it comes from
Maybe other people have more efficient algorithm to do this which would be interessting for me too.
If you have 2 files with the lists of files you might want to compare, a grep -f file1 file2 or grep -vf file1 file2 might be more efficient than my example.
I want a soultion to compare two arrays in sh with an easy way.I want a solution to synchrose users between different AIX servers where no NIS is available. All users are meant to be same on all 10 servers. So the approach is to consider first server as master user repository and whatever the users... (0 Replies)
Hi all,
I have the following script where the contents of file1 and file2 would be something like this:
file1:
56790,0,0,100998765
89756,0,0,100567876
867645,1,3,678777654
file2:
56790,0,0,100998765
65776,0,0,4766457890
+5896,0,0,675489876
What I then want to do is check if... (4 Replies)
Hi there all,
I am having a question.
Is it posible to compare elements of 2 different arrays?
For example I got
Array 1 | Array 2
123_abc | 123_bcd
123_bcd | 234_bcd
234_abc | 567_abc
234_bcd | 123_abc
than the match is
123_abc & 234_bcd and non of the others.
So... (3 Replies)
Hello,
Let's say that we have the two following arrays
@array1=
@array2=
Is there any easy way to compare these two arrays and print the values that exist in array1 and not in array2 and the values that exist in array2 and not in array1?
Regards,
Chriss_58 (3 Replies)
Hi Im supposed to compare lines in a file :
KB0005 1019 T IFVATVPVI 0.691 PKC YES
KB0005 1036 T YFLQTSQQL 0.785 PKC YES
KB0005 1037 S FLQTSQQLK 0.585 DNAPK YES
KB0005 1045 S KQLESEGRS 0.669 PKC YES
KB0005 1045 S KQLESEGRS 0.880 unsp YES
KB204320 1019 T IFVATVPVI 0.699 PKC YES
... (7 Replies)
Hi,
my first post here!
Description of my problem:
I have one txt-file with six rows and each row contains seven numbers seperated with whitespaces.
I want to:
Compare one array with seven numbers with each row of numbers in the txt-file.
I have managed to compare one array with... (6 Replies)
Hello,
Consider the following 2 arrays:
Array1 = qw(Fa0/0 Fa0/1 Fa0/2 Fa0/3);
Array1 = qw(Fa0/1 Fa0/2 Fa0/3 Fa0/4);
I want to compare the following 2 arrays as follows:
Take specific action when elements of Array1 that doesn't exist in Array2 (in my example: Fa0/0).
Take another... (4 Replies)
I've been trying to have an array of ip addresses go through a loop one at a time. Then compare if the current element is in another array of ip addresses. I've traced my error with /bin/bash -x
+ for c in '"${ip}"'
./netk5: line 65: 50.17.231.23 23.64.146.110 23.64.159.139 107.14.36.129... (17 Replies)
I have two arrays and they look like this:
array=(`cat /local/mnt/*sys/*includes|grep -v NEW`)
array2=(`cat /tmp/*sys.z |grep -v NEW`)
I am trying to compare them but I need to use the diff -u command. I am not sure how to do this. I cannot just do diff -u ${array} ${array2}
I cannot... (4 Replies)
Discussion started by: newbie2010
4 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS -c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)
02-03-2013
