I have two files:
One is a list of numbers:
1
5
6
7
10
The second is a very long string
abcdefghijklmno......1234567890
I'd like to print a new file with a 5 character substring that starts at each the positions listed in the 1st file:
such as:
abcde (4 Replies)
hi
i need to name a file with a substring of a another file name.
i.e. if the old filename is abc.txt , the new filename should be abc_1.txt
i should get the substring of the file name and then name the new one
please let me know how to do it (4 Replies)
Hi,
I have a folder list as below, I want to write a script to return a list like:
CASTLE_BU_20080801
CAUSEWAY_BU_20080801
HUNGHOM_BU_20080801
:
:
Can anyone help?
Thanks!
Victor Cheung
List of the folder:
# ls
CASTLE_BU_20080801.DMP OFFICE_MY1_BU_20080801.DMP... (1 Reply)
I'm new to shell scripting and am trying to write a small script that pulls a substring out of a file that has a few lines of text in it. The file will eventually have a lot of text, I just put a few lines in it for testing purposes.
Anyway, this is what I have so far...
#!/bin/ksh
... (4 Replies)
Hi,
I have a file with a long string, in the format:
name1=value,name2=value2.....namen=valuen
I want to query the file and extract 'value2' ONLY. name2=value2 can exist anywhere within the file.
Can anyone help me please wth a suitable BASH command?
Many thanks,
Matt (4 Replies)
Hi,
In my shell script. I am reading all files in directory.
And say if the file names are as follows:
adio_idfl_201302_df.txt
dfa_201301_dll.ctl
dalkd_20130301.csv
I would like to extract the numeric piece of each file name and display as follows:
201302
201301
20130301
I... (9 Replies)
Hello,
I have in my backup folder, files with names convention like this :
randomFileNames_13-02-2014_23h13m09+1392333189
randomFileNames_14-02-2014_02h13m09+1392343989
randomFileNames_14-02-2014_04h13m09+1392351189
etc....
Base on timestamp at end of the filename, I would to delete all the... (7 Replies)
Hello,
A question please.
A have a file that contains a string. Ex:
AAAABBCCCCCDDEEEEEEEEEEFF
I'd want to recover 2 substrings, 'BB' and 'FF' and then leave them in a new file.
Could anoyone help me please?
Thanks in advance (3 Replies)
Hello,
A question please.
A have a file that contains a string. Ex:
AAAABBCCCCCDDEEEEEEEEEEFF
I'd want to recover 2 substrings, 'BB' and 'FF' and then leave them in a new file.
From position 5, 2 caracters (ex:"BB") and from position 25, 2 caracters (ex:"FF") in a file.
Could anoyone help me... (3 Replies)
I want to merge the lines by matching substring of the first file with first column of the second file.
file1:
S00739A_ACAGTG_L001_R1.fq.gz
S00739A_ACAGTG_L001_R2.fq.gz
S00739B_GCCAAT_L001_R1.fq.gz
S00739B_GCCAAT_L001_R2.fq.gz
S00739D_GTGAAA_L001_R1.fq.gz
S00739D_GTGAAA_L001_R2.fq.gz... (14 Replies)
Discussion started by: yifangt
14 Replies
LEARN ABOUT DEBIAN
clmresidue
clm residue(1) USER COMMANDS clm residue(1)
NAME
clm residue - extend clustering of subgraph to clustering of graph.
clmresidue is not in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode
residue. The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.
SYNOPSIS
clm residue -icl fname (input clustering) -imx fname (input graph) [-rpm fname (residue projection matrix)] [-o fname (output clustering
file)]
DESCRIPTION
The cluster file presumably contains a clustering of a subgraph of the graph G contained by the matrix file, implying that the row domain of
that clustering is a subset of the node domain of the graph. clm residue will compute a simple upwards projection of that clustering,
resulting in a clustering of G.
OPTIONS
-imx fname (input graph)
-icl fname (input clustering)
-rpm fname (residue projection matrix)
The name for the file in which the residue projection matrix is stored. It contains for each node and for each cluster in the input clus-
tering the combined weight of the (edges to the) neighbours of that node in that cluster. The default output file name is out.rpm.
-o fname (output clustering file)
The name for the file in which the majority vote projection clustering is stored. Aka the majority vote projection clustering storage file
name.
This embodies a very crude approach to distributing the missing nodes in the input clustering onto that same cluster. For each node, the
cluster is taken for which the residue projection is the largest (see above). The residue (i.e. the set of missing nodes) is initially
viewed as a cluster; the set of nodes for which the projection is largest for the residue itself will form a new cluster, if it is not
empty.
By default output is sent to STDOUT.
AUTHOR
Stijn van Dongen.
SEE ALSO
mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.
clm residue 12-068 8 Mar 2012 clm residue(1)