01-25-2013
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi
I have 3 patterns for example to be searched.
These three patterns are available in file1.
The patterns to be searched are in file2.
I want to search the pattern of file1 to file2.
Can any one help with example?
Regards
Dhana (1 Reply)
Discussion started by: dhanamurthy
1 Replies
2. Shell Programming and Scripting
Hi,
From the pattern mentioned below remove lines based on pattern range.
Conditions
1 Look For all lines starting with ALTER TABLE and Ending with ; and contains the word MOVE.I wanto to remove these lines from the file sample below.
Note : The above pattern list could be found in... (1 Reply)
Discussion started by: rajan_san
1 Replies
3. Shell Programming and Scripting
Good day, great gurus,
I'm new to Perl, and programming in general. I'm trying to retrieve a column of data from my text file which spans a non-specific number of lines. So I did a regexp that will pick out the columns. However,my pattern would vary. I tried using a foreach loop unsuccessfully.... (2 Replies)
Discussion started by: Sp3ck
2 Replies
4. Shell Programming and Scripting
Hi Gurus,
I have a file say for ex. file1 which has 3500 lines in it which are different account numbers and another file (file2) which has 230000 lines in it. I want to read all the lines in file1 and delete all those lines from file2 which has that same pattern as in file1. I am not quite... (4 Replies)
Discussion started by: toms
4 Replies
5. Shell Programming and Scripting
Hi All, I need to grep few files which has words like the below in the file name , which i want to put it in a file and and grep for the files which contain these names and move it to a new directory ,
full file name -C20091210.1000-20091210.1100_SMGBSC3:1000... (2 Replies)
Discussion started by: anita07
2 Replies
6. Shell Programming and Scripting
Hi, I want to list all file that match user input ( specified shell wildcard) but when I compile it dont list me
#!/usr/bin/perl -w
print "Enter Advance Search Function: ";
chomp ($func = <STDIN>);
my @files = glob("$func");
foreach my $file (@files)
{
print "$file\n";... (1 Reply)
Discussion started by: guidely
1 Replies
7. Shell Programming and Scripting
I have two files: usednaslist & naslist
Using RHEL5
usednaslist
>filera:/vol/EQIMS/build
>filera:/vol/iquad_dev/FAST_dev
naslist
>server12 SunOS filera:/vol/EQIMS/build /users/uxsrvlogs
>servers3 SunOS filera:/vol/iquad_dev/FAST_dev /mnt
>server4 SunOS ... (2 Replies)
Discussion started by: nitrobass24
2 Replies
8. UNIX for Beginners Questions & Answers
How do I use grep to select words that start with I or O, end in box, and contain at least one letter in between them?
the text file mailinfo.txt contains
Inbox
the Inbox
Is a match box
Doesn't match
INBOX
Outbox
Outbox1
InbOX
Ibox
I box
If the command works correctly it... (4 Replies)
Discussion started by: steezuschrist96
4 Replies
9. UNIX for Beginners Questions & Answers
When I use the following grep command with options -F and -f, its just displaying the text related to only the last pattern.
Command: $ grep -f pattern_file.txt input_file.txt
Output: doc-C2-16354
Even the following command yields the same output:
Command: $ grep -Ff pattern_file.txt... (6 Replies)
Discussion started by: nsai
6 Replies
10. UNIX for Beginners Questions & Answers
I am able to grep multiple patterns which stored in a files. However, how could we replace the whole line with either the pattern or new string?
For example:
pattern_file: *Info in the () is not part of the pattern file. They are the intended name to replace the whole line after the pattern... (5 Replies)
Discussion started by: wxboo
5 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)
NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)