Cut the two column from non delimited file Post: 302756099

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Top Forums UNIX for Dummies Questions & Answers Cut the two column from non delimited file Post 302756099 by Wan Fahmi on Tuesday 15th of January 2013 07:44:19 AM

01-15-2013

Registered User

Cut the two column from non delimited file

Hi, I have a question how to cut the column from non delimited file

This is my file

Code:

gene_id ENSG00000223972 transcript_id ENST00000456328 exon_number 1 gene_biotype pseudogene gene_name DDX11L1 transcript_name DDX11L1-002 tss_id TSS26614
gene_id ENSG00000223972 transcript_id ENST00000515242 exon_number 1 gene_biotype pseudogene gene_name DDX11L1 transcript_name DDX11L1-201 tss_id TSS165962
gene_id ENSG00000223972 transcript_id ENST00000518655 exon_number 1 gene_biotype pseudogene gene_name DDX11L1 transcript_name DDX11L1-202 tss_id TSS165964
gene_id ENSG00000223972 transcript_id ENST00000450305 exon_number 1 gene_biotype pseudogene gene_name DDX11L1 transcript_name DDX11L1-001 tss_id TSS72060
gene_id ENSG00000223972 transcript_id ENST00000450305 exon_number 2 gene_biotype pseudogene gene_name DDX11L1 transcript_name DDX11L1-001 tss_id TSS72060
gene_id ENSG00000223972 transcript_id ENST00000518655 exon_number 2 gene_biotype pseudogene gene_name DDX11L1 transcript_name DDX11L1-202 tss_id TSS165964

I want to cut only the 1st and 2nd column (gene_id, ENST#)

Thank you

Last edited by Scrutinizer; 01-15-2013 at 08:52 AM.. Reason: quote tags => code tags

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LEARN ABOUT FREEBSD

colrm

COLRM(1)						    BSD General Commands Manual 						  COLRM(1)

NAME

     colrm -- remove columns from a file

SYNOPSIS

     colrm [start [stop]]

DESCRIPTION

     The colrm utility removes selected columns from the lines of a file.  A column is defined as a single character in a line.  Input is read
     from the standard input.  Output is written to the standard output.

     If only the start column is specified, columns numbered less than the start column will be written.  If both start and stop columns are spec-
     ified, columns numbered less than the start column or greater than the stop column will be written.  Column numbering starts with one, not
     zero.

     Tab characters increment the column count to the next multiple of eight.  Backspace characters decrement the column count by one.

ENVIRONMENT

     The LANG, LC_ALL and LC_CTYPE environment variables affect the execution of colrm as described in environ(7).

EXIT STATUS

     The colrm utility exits 0 on success, and >0 if an error occurs.

SEE ALSO

     awk(1), column(1), cut(1), paste(1)

HISTORY

     The colrm command appeared in 3.0BSD.

BSD
								  August 4, 2004							       BSD

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