Hi,
I want to input unix variable to sqlplus.The following is working fine
sqlplus username/password @dummy.sql param1 param2 << EOF
create user $1 identified by $2;
EOF
But I dont want any file name to be passed,I just want to pass the parameter. Is there any way to that??
Thanks... (3 Replies)
Hi,
In normal shell scripting, how do you pass the output of a command to a variable, instead of a file and be able to use it later?
The code is:
#!/bin/bash
who | cut -d" " -f1 > onlineusers
Instead of passing the output of the above command to the file called 'onlineusers'... (1 Reply)
Hi all,
I have a script in file1 which gets input from the user say variable "TYPE". This variable is present in the other file2. I want to replace the variable in the file2 with the value given by the user and print the file. How can I achieve this task?
file1
code
echo "Give... (3 Replies)
Hi,
How can I modify the FILETYPE command ?
I want to provide the file extension, like txt, root .?
Thanks,
#!/bin/bash
FROM=$1
TO=$2
FILETYPE=$3
... (4 Replies)
All,
I have a log file containing lots of data now i want to extract all text between block below(names) without the title or end pattern but only names,
++++START++++
SCOTT TIGER
HENRY PAUL
JARED OTIENO
OMOLLO JA NIGERIA
++++END++++
the names i want to return and store in a variable in... (1 Reply)
Hi Guys,
i have a file where data is in the below format::
data1 data2
data3 data4
data4 data6
my script written as::
#!/bin/ksh
cd $1
at now <<END
sh $2
END
Here i want to pass the values stored in the above file one by one till the end of line.
Here if i am doing it as:: (2 Replies)
cat a1
scott
robert
tom
test
script :
#!/usr/bin/ksh
for NAME in `cat a1`
do
VALUE=`sqlplus -silent "nobody/bobody01@testq" <<END
set pagesize 0 feedback off verify off heading off echo off
select username from dba_users where username=upper('$NAME');
END`
if ; then
echo... (3 Replies)
Hi all,
I have a file looks like
AAAA 111
BBBB 222
CCCC 333
need to pass variable value like var1=AAAA and var2=111
to another command for three times with next values.
stuck over here
cat file | while read line
do
export var1=`awk '{print $1}'`
echo $var1
export var2=`cat file... (3 Replies)
The red text at the bottom represents the three lines I want to address.
I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion... (3 Replies)
Below is the command
mv AP_FLEXCUBE_INTERFACE10.txt FTPYMNTE_`date "+%Y%m%d%H%M%S" | tr '' ''`.TXT
it is changing the file name to a different name according to time stamp dynamically. I want to capture that dynamic file name present in the directory to a variable .
After that i want to... (6 Replies)
Discussion started by: sujit das
6 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)