Hi,
Is there any way to change one date format to another ?? I mean I have a file having dates in the format (Thu Sep 29 2005) ... and i wud like to change these to YYYYMMDD format .. is there any command which does so ?? Or anything like enum which we have in C ??
Thanks in advance,
... (5 Replies)
Hi,
There are lots of threads about how to manipulate the date using date +%m %.......
But how can I change the default format of the commad date?
$ date
Mon Apr 10 10:57:15 BST 2006
This would be on fedora and SunOs.
Cheers,
Neil (4 Replies)
Dear Experts,
Currently my script is gereating the output like this as mentioned below.
8718,8718,0,8777
7450,7450,0,7483
5063,5063,0,5091
3840,3840,0,3855
3129,3129,0,3142
2400,2400,0,2419
2597,2597,0,2604
3055,3055,0,3078
4249,4249,0,4266
4927,4927,0,4957
8920,8920,0,8978... (4 Replies)
Hi, I have a column in a table of Timestamp datatype. For Example : Var1 is the column 2008-06-26-10.10.30.2006. I have Given query as date(var1) and time (var1) I got the file as in the below format :
File1:
Col1 Col2
2008-06-02|12.36.06
2008-06-01|23.36.35
But the problem is... (7 Replies)
i have an variable mydate=2008Nov07
i want o/p as in variable mymonth=11 (i.e nov comes on 11 number month)
i want some command to do this for any month without using any loop.
plz help me (1 Reply)
Hi,
I'm in need of creating a file in the fasta format:
>1A6A.A
HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN
VPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR
VEHWGLDEPLLKHWEF
>1A6A.B ... (5 Replies)
I have a list of dates in the following format: mm/dd/yyyy and want to change these to the MySQL standard format: yyyy-mm-dd.
The dates in the original file may or may not be zero padded, so April is sometimes "04" and other times simply "4".
This is what I use to change the format:
sed -i '' -e... (2 Replies)
Hi all,
I have a file with below data
af23b|11-FEB-12|acc7
ad23b|12-JAN-12|acc4
as23b|15-DEC-11|acc5
z123b|18-FEB-12|acc1
I need the output as below:-(date in yyyymmdd format)
af23b|20120211|acc7
ad23b|20120112|acc4
as23b|20111215|acc5
z123b|20120218|acc1
Please help me on this.... (7 Replies)
Hi,
I am having a file of dna sequences in fasta format which look like this:
>admin_1_45
atatagcaga
>admin_1_46
atatagcagaatatatat
with many such thousands of sequences in a single file. I want to the replace the accession Id "admin_1_45" similarly in following sequences to... (5 Replies)
Hello all,
I am tryign to change the format of files (which are many in numbers). They at present are named like this:
SomeProcess_M-130_100_1_3BR.root
SomeProcess_M-130_101_2_3BX.root
SomeProcess_M-130_103_3_3RY.root
SomeProcess_M-130_105_1_3GH.root
SomeProcess_M-130_99_1_3LF.root... (7 Replies)
Discussion started by: emily
7 Replies
LEARN ABOUT DEBIAN
tigr-extract
TIGR-GLIMMER(1) General Commands Manual TIGR-GLIMMER(1)NAME
tigr-glimmer -- Fine start/stop positions of genes in genome sequence
SYNOPSIS
tigr-extract [genome-file options]
DESCRIPTION
Program extract takes a FASTA format sequence file and a file with a list of start/stop positions in that file (e.g., as produced by the
long-orfs program) and extracts and outputs the specified sequences.
The first command-line argument is the name of the sequence file, which must be in FASTA format.
The second command-line argument is the name of the coordinate file. It must contain a list of pairs of positions in the first file, one
per line. The format of each entry is:
<IDstring>> <start position> <stop position>
This file should contain no other information, so if you're using the output of glimmer or long-orfs , you'll have to cut off header
lines.
The output of the program goes to the standard output and has one line for each line in the coordinate file. Each line contains the
IDstring , followed by white space, followed by the substring of the sequence file specified by the coordinate pair. Specifically, the
substring starts at the first position of the pair and ends at the second position (inclusive). If the first position is bigger than the
second, then the DNA reverse complement of each position is generated. Start/stop pairs that "wrap around" the end of the genome are
allowed.
OPTIONS -skip makes the output omit the first 3 characters of each sequence, i.e., it skips over the start codon. This was the behaviour of
the previous version of the program.
-l makes the output omit an sequences shorter than n characters. n includes the 3 skipped characters if the -skip switch is
one.
SEE ALSO
tigr-glimmer3 (1), tigr-long-orfs (1), tigr-adjust (1), tigr-anomaly (1), tigr-build-icm (1), tigr-check (1), tigr-codon-usage (1), tigr-
compare-lists (1), tigr-extract (1), tigr-generate (1), tigr-get-len (1), tigr-get-putative (1),
http://www.tigr.org/software/glimmer/
Please see the readme in /usr/share/doc/tigr-glimmer for a description on how to use Glimmer3.
AUTHOR
This manual page was quickly copied from the glimmer web site by Steffen Moeller moeller@debian.org for the Debian system.
TIGR-GLIMMER(1)