Hi,
Is there any way to change one date format to another ?? I mean I have a file having dates in the format (Thu Sep 29 2005) ... and i wud like to change these to YYYYMMDD format .. is there any command which does so ?? Or anything like enum which we have in C ??
Thanks in advance,
... (5 Replies)
Hi,
There are lots of threads about how to manipulate the date using date +%m %.......
But how can I change the default format of the commad date?
$ date
Mon Apr 10 10:57:15 BST 2006
This would be on fedora and SunOs.
Cheers,
Neil (4 Replies)
Dear Experts,
Currently my script is gereating the output like this as mentioned below.
8718,8718,0,8777
7450,7450,0,7483
5063,5063,0,5091
3840,3840,0,3855
3129,3129,0,3142
2400,2400,0,2419
2597,2597,0,2604
3055,3055,0,3078
4249,4249,0,4266
4927,4927,0,4957
8920,8920,0,8978... (4 Replies)
Hi, I have a column in a table of Timestamp datatype. For Example : Var1 is the column 2008-06-26-10.10.30.2006. I have Given query as date(var1) and time (var1) I got the file as in the below format :
File1:
Col1 Col2
2008-06-02|12.36.06
2008-06-01|23.36.35
But the problem is... (7 Replies)
i have an variable mydate=2008Nov07
i want o/p as in variable mymonth=11 (i.e nov comes on 11 number month)
i want some command to do this for any month without using any loop.
plz help me (1 Reply)
Hi,
I'm in need of creating a file in the fasta format:
>1A6A.A
HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN
VPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR
VEHWGLDEPLLKHWEF
>1A6A.B ... (5 Replies)
I have a list of dates in the following format: mm/dd/yyyy and want to change these to the MySQL standard format: yyyy-mm-dd.
The dates in the original file may or may not be zero padded, so April is sometimes "04" and other times simply "4".
This is what I use to change the format:
sed -i '' -e... (2 Replies)
Hi all,
I have a file with below data
af23b|11-FEB-12|acc7
ad23b|12-JAN-12|acc4
as23b|15-DEC-11|acc5
z123b|18-FEB-12|acc1
I need the output as below:-(date in yyyymmdd format)
af23b|20120211|acc7
ad23b|20120112|acc4
as23b|20111215|acc5
z123b|20120218|acc1
Please help me on this.... (7 Replies)
Hi,
I am having a file of dna sequences in fasta format which look like this:
>admin_1_45
atatagcaga
>admin_1_46
atatagcagaatatatat
with many such thousands of sequences in a single file. I want to the replace the accession Id "admin_1_45" similarly in following sequences to... (5 Replies)
Hello all,
I am tryign to change the format of files (which are many in numbers). They at present are named like this:
SomeProcess_M-130_100_1_3BR.root
SomeProcess_M-130_101_2_3BX.root
SomeProcess_M-130_103_3_3RY.root
SomeProcess_M-130_105_1_3GH.root
SomeProcess_M-130_99_1_3LF.root... (7 Replies)
Discussion started by: emily
7 Replies
LEARN ABOUT DEBIAN
bio::alignio::fasta
Bio::AlignIO::fasta(3pm) User Contributed Perl Documentation Bio::AlignIO::fasta(3pm)NAME
Bio::AlignIO::fasta - fasta MSA Sequence input/output stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::AlignIO class.
DESCRIPTION
This object can transform Bio::SimpleAlign objects to and from fasta flat file databases. This is for the fasta alignment format, not for
the FastA sequence analysis program. To process the alignments from FastA (FastX, FastN, FastP, tFastA, etc) use the Bio::SearchIO module.
FEEDBACK
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS
Peter Schattner
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_aln
Title : next_aln
Usage : $aln = $stream->next_aln
Function: returns the next alignment in the stream.
Returns : Bio::Align::AlignI object - returns 0 on end of file
or on error
Args : -width => optional argument to specify the width sequence
will be written (60 chars by default)
See Bio::Align::AlignI
write_aln
Title : write_aln
Usage : $stream->write_aln(@aln)
Function: writes the $aln object into the stream in fasta format
Returns : 1 for success and 0 for error
Args : L<Bio::Align::AlignI> object
See Bio::Align::AlignI
_get_len
Title : _get_len
Usage :
Function: determine number of alphabetic chars
Returns : integer
Args : sequence string
width
Title : width
Usage : $obj->width($newwidth)
$width = $obj->width;
Function: Get/set width of alignment
Returns : integer value of width
Args : on set, new value (a scalar or undef, optional)
perl v5.14.2 2012-03-02 Bio::AlignIO::fasta(3pm)