I just built a new box to run Suse, and I guess I shoud have spent more time researching the HCL. Anyway, the Promise RAID card I have will not work, and I am unable to install the OS. The only other IDE devide in the box is a DVDOM.
I can only think of 2 options, but would appreciate some... (1 Reply)
Hi,
I am looking for basic shell script to feed Gnuplot with live data, to arrange basic animation.
I mean one-liner one variable real function.
Any idea or experiences from the past, generating Gnuplot animation on dumb terminal (ASCII only) ?
Or please refer me to a nice web site.
... (7 Replies)
I'm trying to understand if it's possible to create a set of variables that are numbered based on another variable (using eval) in a loop, and then call on it before the loop ends.
As an example I've written a script called question (The fist command is to show what is the contents of the... (2 Replies)
Hi Im running this script, which is supposed to find the max value build some tables and then stop running once all the tables are built. Thing is , it keeps assigning a null value to $h and then $g is null so it keep building tables i.e. testupdateNUL. How can I stop this? Here is what I have:
... (4 Replies)
Hi all
Sorry for the basic question, but i am writing a shell script to get around a slightly flaky binary that ships with one of our servers. This particular utility randomly generates the correct information and could work first time or may work on the 12th or 100th attempt etc !.... (4 Replies)
Hello All,
Maybe I'm Missing something here but I have NOOO idea what the heck is going on with this....?
I have a Variable that contains a PATTERN of what I'm considering "Illegal Characters". So what I'm doing is looping
through a string containing some of these "Illegal Characters". Now... (5 Replies)
Hi,
I want to read file multiple times. Right now i am using while loop but that is not working.
ex.
While read line
do
while read line2
do
echo stmt1
#processing some data based on data.,
done < file2.txt
done < file1.txt # This will have 10... (4 Replies)
Here's my code:
awk -F '' 'NR==FNR {
if (/time/ && $5>10)
A=$2" "$3":"$4":"($5-01)
else if (/time/ && $5<01)
A=$2" "$3":"$4-01":"(59-$5)
else if (/time/ && $5<=10)
A=$2" "$3":"$4":0"($5-01)
else if (/close/) {
B=0
n1=n2;
... (2 Replies)
Discussion started by: klane
2 Replies
LEARN ABOUT DEBIAN
bio::factory::sequencefactoryi
Bio::Factory::SequenceFactoryI(3pm) User Contributed Perl Documentation Bio::Factory::SequenceFactoryI(3pm)NAME
Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)
SYNOPSIS
# do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like
use Bio::Seq::SeqFactory;
my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');
my $seq = $seqbuilder->create(-seq => 'ACTGAT',
-display_id => 'exampleseq');
print "seq is a ", ref($seq), "
";
DESCRIPTION
A generic way to build Sequence objects via a pluggable factory. This reduces the amount of code that looks like
if( $type eq 'Bio::PrimarySeq' ) { ... }
elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
create
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT',
-id => 'name');
Function: Instantiates new Bio::PrimarySeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
objects.
Returns : Bio::PrimarySeqI
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name
perl v5.14.2 2012-03-02 Bio::Factory::SequenceFactoryI(3pm)