Core(3) User Contributed Perl Documentation Core(3)
NAME
PDL::Core - fundamental PDL functionality
DESCRIPTION
Methods and functions for type conversions, PDL creation, type conversion, threading etc.
SYNOPSIS
use PDL::Core; # Normal routines
use PDL::Core ':Internal'; # Hairy routines
FUNCTIONS
pdl
piddle constructor - creates new piddle from perl scalars/arrays
$a = pdl(SCALAR|ARRAY REFERENCE|ARRAY);
$a = pdl [1..10]; # 1D array
$a = pdl ([1..10]); # 1D array
$a = pdl (1,2,3,4); # Ditto
$b = pdl [[1,2,3],[4,5,6]]; # 2D 3x2 array
$b = pdl 42 # 0-dimensional scalar
$c = pdl $a; # Make a new copy
$a = pdl([1,2,3],[4,5,6]); # 2D
$a = pdl([[1,2,3],[4,5,6]]); # 2D
Note the last two are equivalent - a list is automatically converted to a list reference for syntactic convenience. i.e. you can omit the
outer "[]"
"pdl()" is a functional synonym for the 'new' constructor, e.g.:
$x = new PDL [1..10];
In order to control how undefs are handled in converting from perl lists to PDLs, one can set the variable $PDL::undefval. For example:
$foo = [[1,2,undef],[undef,3,4]];
$PDL::undefval = -999;
$f = pdl $foo;
print $f
[
[ 1 2 -999]
[-999 3 4]
]
$PDL::undefval defaults to zero.
null
Returns a 'null' piddle.
$x = null;
"null()" has a special meaning to PDL::PP. It is used to flag a special kind of empty piddle, which can grow to appropriate dimensions to
store a result (as opposed to storing a result in an existing piddle).
perldl> sumover sequence(10,10), $ans=null;p $ans
[45 145 245 345 445 545 645 745 845 945]
nullcreate
Returns a 'null' piddle.
$x = PDL->nullcreate($arg)
This is an routine used by many of the threading primitives (i.e. sumover, minimum, etc.) to generate a null piddle for the function's out-
put that will behave properly for derived (or subclassed) PDL objects.
For the above usage: If $arg is a PDL, or a derived PDL, then "$arg->null" is returned. If $arg is a scalar (i.e. a zero-dimensional PDL)
then "$PDL->null" is returned.
PDL::Derived->nullcreate(10)
returns PDL::Derived->null.
PDL->nullcreate($pdlderived)
returns $pdlderived->null.
nelem
Return the number of elements in a piddle
$n = nelem($piddle); $n = $piddle->nelem;
$mean = sum($data)/nelem($data);
dims
Return piddle dimensions as a perl list
@dims = $piddle->dims; @dims = dims($piddle);
perldl> p @tmp = dims zeroes 10,3,22
10 3 22
ndims
Returns the number of dimensions in a piddle. Alias for getndims.
getndims
Returns the number of dimensions in a piddle
$ndims = $piddle->getndims;
perldl> p zeroes(10,3,22)->getndims
3
dim
Returns the size of the given dimension of a piddle. Alias for getdim.
getdim
Returns the size of the given dimension.
$dim0 = $piddle->getdim(0);
perldl> p zeroes(10,3,22)->getdim(1)
3
Negative indices count from the end of the dims array. Indices beyond the end will return a size of 1. This reflects the idea that any pdl
is equivalent to an infinitely dimensional array in which only a finite number of dimensions have a size different from one. For example,
in that sense a 3D piddle of shape [3,5,2] is equivalent to a [3,5,2,1,1,1,1,1,....] piddle. Accordingly,
print $a->getdim(10000);
will print 1 for most practically encountered piddles.
topdl
alternate piddle constructor - ensures arg is a piddle
$a = topdl(SCALAR|ARRAY REFERENCE|ARRAY);
The difference between pdl() and "topdl()" is that the latter will just 'fall through' if the argument is already a piddle. It will return
a reference and NOT a new copy.
This is particulary useful if you are writing a function which is doing some fiddling with internals and assumes a piddle argument (e.g.
for method calls). Using "topdl()" will ensure nothing breaks if passed with '2'.
Note that "topdl()" is not exported by default (see example below for usage).
use PDL::Core ':Internal'; # use the internal routines of
# the Core module
$a = topdl 43; # $a is piddle with value '43'
$b = topdl $piddle; # fall through
$a = topdl (1,2,3,4); # Convert 1D array
PDL::get_datatype
Internal: Return the numeric value identifying the piddle datatype
$x = $piddle->get_datatype;
Mainly used for internal routines.
NOTE: get_datatype returns 'just a number' not any special type object, unlike type.
howbig
Returns the size of a piddle datatype in bytes.
Note that "howbig()" is not exported by default (see example below for usage).
use PDL::Core ':Internal'; # use the internal routines of
# the Core module
$size = howbig($piddle->get_datatype);
Mainly used for internal routines.
NOTE: NOT a method! This is because get_datatype returns 'just a number' not any special object.
perldl> p howbig(ushort([1..10])->get_datatype)
2
threadids
Returns the piddle thread IDs as a perl list
Note that "threadids()" is not exported by default (see example below for usage).
use PDL::Core ':Internal'; # use the internal routines of
# the Core module
@ids = threadids $piddle;
doflow
Turn on/off dataflow
$x->doflow; doflow($x);
flows
Whether or not a piddle is indulging in dataflow
something if $x->flows; $hmm = flows($x);
PDL::new
new piddle constructor method
$x = PDL->new(SCALAR|ARRAY|ARRAY REF);
$x = PDL->new(42);
$y = new PDL [1..10];
Constructs piddle from perl numbers and lists.
PDL::copy
Make a physical copy of a piddle
$new = $old->copy;
Since "$new = $old" just makes a new reference, the "copy" method is provided to allow real independent copies to be made.
PDL::unwind
Return a piddle which is the same as the argument except that all threadids have been removed.
$y = $x->unwind;
PDL::make_physical
Make sure the data portion of a piddle can be accessed from XS code.
$a->make_physical;
$a->call_my_xs_method;
Ensures that a piddle gets its own allocated copy of data. This obviously implies that there are certain piddles which do not have their
own data. These are so called virtual piddles that make use of the vaffine optimisation (see PDL::Indexing). They do not have their own
copy of data but instead store only access information to some (or all) of another piddle's data.
Note: this function should not be used unless absolutely neccessary since otherwise memory requirements might be severly increased. Instead
of writing your own XS code with the need to call "make_physical" you might want to consider using the PDL preprocessor (see PDL::PP) which
can be used to transparently access virtual piddles without the need to physicalise them (though there are exceptions).
dummy
Insert a 'dummy dimension' of given length (defaults to 1)
No relation to the 'Dungeon Dimensions' in Discworld!
Negative positions specify relative to last dimension, i.e. "dummy(-1)" appends one dimension at end, "dummy(-2)" inserts a dummy dimension
in front of the last dim, etc.
If you specify a dimension position larger than the existing dimension list of your PDL, the PDL gets automagically padded with extra dummy
dimensions so that you get the dim you asked for, in the slot you asked for. This could cause you trouble if, for example, you ask for
$a->dummy(5000,1) because $a will get 5,000 dimensions, each of rank 1.
Because padding at the beginning of the dimension list moves existing dimensions from slot to slot, it's considered unsafe, so automagic
padding doesn't work for large negative indices -- only for large positive indices.
$y = $x->dummy($position[,$dimsize]);
perldl> p sequence(3)->dummy(0,3)
[
[0 0 0]
[1 1 1]
[2 2 2]
]
perldl> p sequence(3)->dummy(3,2)
[
[
[0 1 2]
]
[
[0 1 2]
]
]
perldl> p sequence(3)->dummy(-3,2)
For safety, <pos> < -(dims+1) is not allowed in dummy, allowed min=-2.
clump
"clumps" several dimensions into one large dimension
If called with one argument $n clumps the first $n dimensions into one. For example, if $a has dimensions "(5,3,4)" then after
$b = $a->clump(2); # Clump 2 first dimensions
the variable $b will have dimensions "(15,4)" and the element "$b->at(7,3)" refers to the element "$a->at(1,2,3)".
Use "clump(-1)" to flatten a piddle. The method flat is provided as a convenient alias.
If "clump" is called with an index list with more than one element it is treated as a list of dimensions that should be clumped together
into one. The resulting clumped dim is placed at the position of the lowest index in the list. This convention ensures that "clump" does
the expected thing in the usual cases. The following example demonstrates typical usage:
$a = sequence 2,3,3,3,5; # 5D piddle
$c = $a->clump(1..3); # clump all the dims 1 to 3 into one
print $c->info; # resulting 3D piddle has clumped dim at pos 1
PDL: Double D [2,27,5]
thread_define
define functions that support threading at the perl level
thread_define 'tline(a(n);b(n))', over {
line $_[0], $_[1]; # make line compliant with threading
};
"thread_define" provides some support for threading (see PDL::Indexing) at the perl level. It allows you to do things for which you nor-
mally would have resorted to PDL::PP (see PDL::PP); however, it is most useful to wrap existing perl functions so that the new routine sup-
ports PDL threading.
"thread_define" is used to define new threading aware functions. Its first argument is a symbolic repesentation of the new function to be
defined. The string is composed of the name of the new function followed by its signature (see PDL::Indexing and PDL::PP) in parentheses.
The second argument is a subroutine that will be called with the slices of the actual runtime arguments as specified by its signature. Cor-
rect dimension sizes and minimal number of dimensions for all arguments will be checked (assuming the rules of PDL threading, see
PDL::Indexing).
The actual work is done by the "signature" class which parses the signature string, does runtime dimension checks and the routine "thread-
over" that generates the loop over all appropriate slices of pdl arguments and creates pdls as needed.
Similar to "pp_def" and its "OtherPars" option it is possible to define the new function so that it accepts normal perl args as well as
piddles. You do this by using the "NOtherPars" parameter in the signature. The number of "NOtherPars" specified will be passed unaltered
into the subroutine given as the second argument of "thread_define". Let's illustrate this with an example:
PDL::thread_define 'triangles(inda();indb();indc()), NOtherPars => 2',
PDL::over {
${$_[3]} .= $_[4].join(',',map {$_->at} @_[0..2]).",-1,
";
};
This defines a function "triangles" that takes 3 piddles as input plus 2 arguments which are passed into the routine unaltered. This rou-
tine is used to collect lists of indices into a perl scalar that is passed by reference. Each line is preceded by a prefix passed as $_[4].
Here is typical usage:
$txt = '';
triangles(pdl(1,2,3),pdl(1),pdl(0),$txt," "x10);
print $txt;
resulting in the following output
1,1,0,-1,
2,1,0,-1,
3,1,0,-1,
which is used in PDL::Graphics::TriD::VRML to generate VRML output.
Currently, this is probably not much more than a POP (proof of principle) but is hoped to be useful enough for some real life work.
Check PDL::PP for the format of the signature. Currently, the "[t]" qualifier and all type qualifiers are ignored.
PDL::thread
Use explicit threading over specified dimensions (see also PDL::Indexing)
$b = $a->thread($dim,[$dim1,...])
$a = zeroes 3,4,5;
$b = $a->thread(2,0);
Same as PDL::thread1, i.e. uses thread id 1.
diagonal
Returns the multidimensional diagonal over the specified dimensions.
$d = $x->diagonal(dim1, dim2,...)
perldl> $a = zeroes(3,3,3);
perldl> ($b = $a->diagonal(0,1))++;
perldl> p $a
[
[
[1 0 0]
[0 1 0]
[0 0 1]
]
[
[1 0 0]
[0 1 0]
[0 0 1]
]
[
[1 0 0]
[0 1 0]
[0 0 1]
]
]
PDL::thread1
Explicit threading over specified dims using thread id 1.
$xx = $x->thread1(3,1)
Wibble
Convenience function interfacing to PDL::Slices::threadI.
PDL::thread2
Explicit threading over specified dims using thread id 2.
$xx = $x->thread2(3,1)
Wibble
Convenience function interfacing to PDL::Slices::threadI.
PDL::thread3
Explicit threading over specified dims using thread id 3.
$xx = $x->thread3(3,1)
Wibble
Convenience function interfacing to PDL::Slices::threadI.
sever
sever any links of this piddle to parent piddles
In PDL it is possible for a piddle to be just another view into another piddle's data. In that case we call this piddle a virtual piddle
and the original piddle owning the data its parent. In other languages these alternate views sometimes run by names such as alias or smart
reference.
Typical functions that return such piddles are "slice", "xchg", "index", etc. Sometimes, however, you would like to separate the virtual
piddle from its parent's data and just give it a life of its own. This is simply achieved by using "sever". For example,
$a = $pdl->index(pdl(0,3,7))->sever;
$a++; # important: $pdl is not modified!
In this regard it acts similar to "copy". However, in general performance is better with "sever" and secondly, "sever" doesn't lead to
futile copying when used on piddles that already have their own data.
$a = zeroes(20);
$a->sever; # NOOP since $a is already its own boss!
PDL::info
Return formatted information about a piddle.
$x->info($format_string);
print $x->info("Type: %T Dim: %-15D State: %S");
Returns a string with info about a piddle. Takes an optional argument to specify the format of information a la sprintf. Format specifiers
are in the form "%<width><letter>" where the width is optional and the letter is one of
T Type
D Formatted Dimensions
F Dataflow status
S Some internal flags (P=physical,V=Vaffine,C=changed)
C Class of this piddle, i.e. "ref $pdl"
A Address of the piddle struct as a unique identifier
M Calculated memory consumption of this piddle's data area
approx
test for approximately equal values (relaxed "==")
# ok if all corresponding values in
# piddles are within 1e-8 of each other
print "ok
" if all approx $a, $b, 1e-8;
"approx" is a relaxed form of the "==" operator and often more appropriate for floating point types ("float" and "double").
Usage:
$res = approx $a, $b [, $eps]
The optional parameter $eps is remembered across invocations and initially set to 1e-6, e.g.
approx $a, $b; # last $eps used (1e-6 initially)
approx $a, $b, 1e-10; # 1e-10
approx $a, $b; # also 1e-10
mslice
Convenience interface to slice, allowing easier inclusion of dimensions in perl code.
$a = $x->mslice(...);
# below is the same as $x->slice("5:7,:,3:4:2")
$a = $x->mslice([5,7],X,[3,4,2]);
nslice
Internally used interface to slice and dice that is the runtime part of the PDL::NiceSlice implementation.
$a = $x->nslice(...);
# below is the same as $x->slice("5:7,:,3:4:2")
$a = $x->nslice([5,7],X,[3,4,2]);
It implements a superset of mslice's features. Should probably not be used in your scripts. Rather resort to the PDL::NiceSlice interface.
inplace
Flag a piddle so that the next operation is done 'in place'
somefunc($x->inplace); somefunc(inplace $x);
In most cases one likes to use the syntax "$y = f($x)", however in many case the operation "f()" can be done correctly 'in place', i.e.
without making a new copy of the data for output. To make it easy to use this, we write "f()" in such a way that it operates in-place, and
use "inplace" to hint that a new copy should be disabled. This also makes for clear syntax.
Obviously this will not work for all functions, and if in doubt see the function's documentation. However one can assume this is true for
all elemental functions (i.e. those which just operate array element by array element like "log10").
perldl> $x = xvals zeroes 10;
perldl> log10(inplace $x)
perldl> p $x
[ -Inf 0 0.30103 0.47712125 0.60205999 0.69897
0.77815125 0.84509804 0.90308999 0.95424251]
is_inplace
Test the in-place flag on a piddle
$out = ($in->is_inplace) ? $in : zeroes($in);
$in->set_inplace(0)
Provides access to the <inplace:inplace> hint flag, within the perl millieu. That way functions you write can be inplace aware...
set_inplace
Set the in-place flag on a piddle
$out = ($in->is_inplace) ? $in : zeroes($in);
$in->set_inplace(0);
Provides access to the <inplace:inplace> hint flag, within the perl millieu. Useful mainly for turning it OFF, as <inplace:inplace> turns
it ON more conveniently.
new_or_inplace
Return back either the argument pdl or a copy of it depending on whether it be flagged in-place or no. Handy for building inplace-aware
functions.
PDL::new_from_specification
Internal method: create piddle by specification
This is the argument processing method called by zeroes and some other functions which constructs piddles from argument lists of the form:
[type], $nx, $ny, $nz,...
For $nx, $ny, etc. 0 and 1D piddles are allowed. Giving those has the same effect as if saying "$arg->list", e.g.
1, pdl(5,2), 4
is equivalent to
1, 5, 2, 4
Note, however, that in all functions using "new_from_specification" calling "func $piddle" will probably not do what you want. So to play
safe use (e.g. with zeroes)
$pdl = zeroes $dimpdl->list;
Calling
$pdl = zeroes $dimpdl;
will rather be equivalent to
$pdl = zeroes $dimpdl->dims;
However,
$pdl = zeroes ushort, $dimpdl;
will again do what you intended since it is interpreted as if you had said
$pdl = zeroes ushort, $dimpdl->list;
This is unfortunate and confusing but no good solution seems obvious that would not break existing scripts.
isempty
Test whether a piddle is empty
print "The piddle has zero dimension
" if $pdl->isempty;
This function returns 1 if the piddle has zero elements. This is useful in particular when using the indexing function which. In the case
of no match to a specified criterion, the returned piddle has zero dimension.
perldl> $a=sequence(10)
perldl> $i=which($a < -1)
perldl> print "I found no matches!
" if ($a->isempty);
Note that having zero elements is rather different from the concept of being a null piddle, see the PDL::FAQ and PDL::Indexing manpages for
discussions of this.
zeroes
construct a zero filled piddle from dimension list or template piddle.
Various forms of usage,
(i) by specification or (ii) by template piddle:
# usage type (i):
$a = zeroes([type], $nx, $ny, $nz,...);
$a = PDL->zeroes([type], $nx, $ny, $nz,...);
$a = $pdl->zeroes([type], $nx, $ny, $nz,...);
# usage type (ii):
$a = zeroes $b;
$a = $b->zeroes
zeroes inplace $a; # Equivalent to $a .= 0;
$a->inplace->zeroes; # ""
perldl> $z = zeroes 4,3
perldl> p $z
[
[0 0 0 0]
[0 0 0 0]
[0 0 0 0]
]
perldl> $z = zeroes ushort, 3,2 # Create ushort array
[ushort() etc. with no arg returns a PDL::Types token]
See also new_from_specification for details on using piddles in the dimensions list.
ones
construct a one filled piddle
$a = ones([type], $nx, $ny, $nz,...);
etc. (see 'zeroes')
see zeroes() and add one
See also new_from_specification for details on using piddles in the dimensions list.
reshape
Change the shape (i.e. dimensions) of a piddle, preserving contents.
$x->reshape(NEWDIMS); reshape($x, NEWDIMS);
The data elements are preserved, obviously they will wrap differently and get truncated if the new array is shorter. If the new array is
longer it will be zero-padded.
***Potential incompatibility with earlier versions of PDL**** If the list of "NEWDIMS" is empty "reshape" will just drop all dimensions of
size 1 (preserving the number of elements):
$a = sequence(3,4,5);
$b = $a(1,3);
$b->reshape();
print $b->info;
PDL: Double D [5]
Dimensions of size 1 will also be dropped if "reshape" is invoked with the argument -1:
$b = $a->reshape(-1);
As opposed to "reshape" without arguments, "reshape(-1)" preserves dataflow:
$a = ones(2,1,2);
$b = $a(0)->reshape(-1);
$b++;
print $a;
[
[
[2 1]
]
[
[2 1]
]
]
Note: an explicit copy of slices is generally forced - this is the only way (for now) of stopping a crash if $x is a slice. Important:
Physical piddles are changed inplace!
perldl> $x = sequence(10)
perldl> reshape $x,3,4; p $x
[
[0 1 2]
[3 4 5]
[6 7 8]
[9 0 0]
]
perldl> reshape $x,5; p $x
[0 1 2 3 4]
flat
flatten a piddle (alias for "$pdl-"clump(-1)>)
$srt = $pdl->flat->qsort;
Useful method to make a 1D piddle from an arbitrarily sized input piddle. Data flows back and forth as usual with slicing routines. Falls
through if argument already <= 1D.
convert
Generic datatype conversion function
$y = convert($x, $newtype);
$y = convert $x, long
$y = convert $x, ushort
$newtype is a type number, for convenience they are returned by "long()" etc when called without arguments.
Datatype_conversions
byte|short|ushort|long|float|double convert shorthands
$y = double $x; $y = ushort [1..10];
# all of byte|short|ushort|long|float|double behave similarly
When called with a piddle argument, they convert to the specific datatype.
When called with a numeric or list / listref argument they construct a new piddle. This is a convenience to avoid having to be long-winded
and say "$x = long(pdl(42))"
Thus one can say:
$a = float(1,2,3,4); # 1D
$a = float([1,2,3],[4,5,6]); # 2D
$a = float([[1,2,3],[4,5,6]]); # 2D
Note the last two are equivalent - a list is automatically converted to a list reference for syntactic convenience. i.e. you can omit the
outer "[]"
When called with no arguments return a special type token. This allows syntactical sugar like:
$x = ones byte, 1000,1000;
This example creates a large piddle directly as byte datatype in order to save memory.
In order to control how undefs are handled in converting from perl lists to PDLs, one can set the variable $PDL::undefval; see the function
pdl() for more details.
perldl> p $x=sqrt float [1..10]
[1 1.41421 1.73205 2 2.23607 2.44949 2.64575 2.82843 3 3.16228]
perldl> p byte $x
[1 1 1 2 2 2 2 2 3 3]
byte
Convert to byte datatype - see 'Datatype_conversions'
short
Convert to short datatype - see 'Datatype_conversions'
ushort
Convert to ushort datatype - see 'Datatype_conversions'
long
Convert to long datatype - see 'Datatype_conversions'
float
Convert to float datatype - see 'Datatype_conversions'
double
Convert to double datatype - see 'Datatype_conversions'
type
return the type of a piddle as a blessed type object
A convenience function for use with the piddle constructors, e.g.
$b = PDL->zeroes($a->type,$a->dims,3);
die "must be float" unless $a->type == float;
See also the discussion of the "PDL::Type" class in PDL::Types. Note that the "PDL::Type" objects have overloaded comparison and stringify
operators so that you can compare and print types:
$a = $a->float if $a->type < float;
$t = $a->type; print "Type is $t";
list
Convert piddle to perl list
@tmp = list $x;
Obviously this is grossly inefficient for the large datasets PDL is designed to handle. This was provided as a get out while PDL matured.
It should now be mostly superseded by superior constructs, such as PP/threading. However it is still occasionally useful and is provied
for backwards compatibility.
for (list $x) {
# Do something on each value...
}
listindices
Convert piddle indices to perl list
@tmp = listindices $x;
@tmp now contains the values "0..nelem($x)".
Obviously this is grossly inefficient for the large datasets PDL is designed to handle. This was provided as a get out while PDL matured.
It should now be mostly superseded by superior constructs, such as PP/threading. However it is still occasionally useful and is provied
for backwards compatibility.
for $i (listindices $x) {
# Do something on each value...
}
set
Set a single value inside a piddle
set $piddle, @position, $value
@position is a coordinate list, of size equal to the number of dimensions in the piddle. Occasionally useful, mainly provided for backwards
compatibility as superseded by use of slice and assigment operator ".=".
perldl> $x = sequence 3,4
perldl> set $x, 2,1,99
perldl> p $x
[
[ 0 1 2]
[ 3 4 99]
[ 6 7 8]
[ 9 10 11]
]
at
Returns a single value inside a piddle as perl scalar.
$z = at($piddle, @position); $z=$piddle->at(@position);
@position is a coordinate list, of size equal to the number of dimensions in the piddle. Occasionally useful in a general context, quite
useful too inside PDL internals.
perldl> $x = sequence 3,4
perldl> p $x->at(1,2)
7
sclr
return a single value from a piddle as a scalar
$val = $a(10)->sclr;
$val = sclr inner($a,$b);
The "sclr" method is useful to turn a piddle into a normal Perl scalar. Its main advantage over using "at" for this purpose is the fact
that you do not need to worry if the piddle is 0D, 1D or higher dimensional. Using "at" you have to supply the correct number of zeroes,
e.g.
$a = sequence(10);
$b = $a->slice('4');
print $b->sclr; # no problem
print $b->at(); # error: needs at least one zero
"sclr" is generally used when a Perl scalar is required instead of a one-element piddle. If the input is a multielement piddle the first
value is returned as a Perl scalar. You can optionally switch on checks to ensure that the input piddle has only one element:
PDL->sclr({Check => 'warn'}); # carp if called with multi-el pdls
PDL->sclr({Check => 'barf'}); # croak if called with multi-el pdls
are the commands to switch on warnings or raise an error if a multielement piddle is passed as input. Note that these options can only be
set when "sclr" is called as a class method (see example above). Use
PDL->sclr({Check=>0});
to switch these checks off again (default setting); When called as a class method the resulting check mode is returned (0: no checking, 1:
warn, 2: barf).
cat
concatentate piddles to N+1 dimensional piddle
Takes a list of N piddles of same shape as argument, returns a single piddle of dimension N+1
perldl> $x = cat ones(3,3),zeroes(3,3),rvals(3,3); p $x
[
[
[1 1 1]
[1 1 1]
[1 1 1]
]
[
[0 0 0]
[0 0 0]
[0 0 0]
]
[
[1 1 1]
[1 0 1]
[1 1 1]
]
]
dog
Opposite of 'cat' :). Split N dim piddle to list of N-1 dim piddles
Takes a single N-dimensional piddle and splits it into a list of N-1 dimensional piddles. The breakup is done along the last dimension.
Note the dataflown connection is still preserved by default, e.g.:
perldl> $p = ones 3,3,3
perldl> ($a,$b,$c) = dog $p
perldl> $b++; p $p
[
[
[1 1 1]
[1 1 1]
[1 1 1]
]
[
[2 2 2]
[2 2 2]
[2 2 2]
]
[
[1 1 1]
[1 1 1]
[1 1 1]
]
]
Break => 1 Break dataflow connection (new copy)
barf
Standard error reporting routine for PDL.
"barf()" is the routine PDL modules should call to report errors. This is because "barf()" will report the error as coming from the correct
line in the module user's script rather than in the PDL module.
It does this magic by unwinding the stack frames until it reaches a package NOT beginning with "PDL::". If you DO want it to report errors
in some module PDL::Foo (e.g. when debugging PDL::Foo) then set the variable "$PDL::Foo::Debugging=1".
Additionally if you set the variable "$PDL::Debugging=1" you will get a COMPLETE stack trace back up to the top level package.
Finally "barf()" will try and report usage information from the PDL documentation database if the error message is of the form 'Usage:
func'.
Remember "barf()" is your friend. *Use* it!
At the perl level:
barf("User has too low an IQ!");
In C or XS code:
barf("You have made %d errors", count);
Note: this is one of the few functions ALWAYS exported by PDL::Core
Retrieve header information from a piddle
$pdl=rfits('file.fits');
$h=$pdl->gethdr;
print "Number of pixels in the X-direction=$$h{NAXIS1}
";
The "gethdr" function retrieves whatever header information is contained within a piddle. The header can be set with sethdr and is always a
hash reference or undef.
"gethdr" returns undef if the piddle has not yet had a header defined; compare with "hdr", which is guaranteed to return a defined value.
Note that gethdr() works by reference: you can modify the header in-place once it has been retrieved:
$a = rfits($filename);
$ah = $a->gethdr();
$ah->{FILENAME} = $filename;
It is also important to realise that the header is not automatically copied when you copy the piddle. See hdrcpy to enable automatic
header linking (copy-by-reference), or do it manually for copy-by-value.
Here's another example: a wrapper around rcols that allows your piddle to remember the file it was read from and the columns could be eas-
ily written (here assuming that no regexp is needed, extensions are left as an exercise for the reader)
sub ext_rcols {
my ($file, @columns)=@_;
my $header={};
$$header{File}=$file;
$$header{Columns}=@columns;
@piddles=rcols $file, @columns;
foreach (@piddles) { $_->sethdr($header); }
return @piddles;
}
hdr
Retrieve header information from a piddle
$pdl->hdr->{CDELT1} = 1;
The "hdr" function allows convenient access to the header of a piddle. Unlike "gethdr" it is guaranteed to return a defined value, so you
can use it in a hash dereference as in the example. If the header doesn't yet exist, it gets autogenerated as an empty hash.
Note that this is usually -- but not always -- What You Want. If you want to use a tied Astro::FITS::Header hash, for example, you should
(currently) construct it yourself and use "sethdr" to put it into the piddle. (But you can certainly just write FITS fields into the
header and write it out -- that should always work).
sethdr
Set header information of a piddle
$pdl = zeroes(100,100);
$h = {NAXIS=>2, NAXIS1=>100, NAXIS=>100, COMMENT=>"Sample FITS-style header"};
# add a FILENAME field to the header
$$h{FILENAME} = 'file.fits';
$pdl->sethdr( $h );
The "sethdr" function sets the header information for a piddle. You must feed in a hash ref or undef, and the piddle's header field is set
to be a new ref to the same hash (or undefined).
The hash ref requirement is a speed bump put in place since the normal use of headers is to store fits header information and the like. Of
course, if you want you can hang whatever ugly old data structure you want off of the header, but that makes life more complex.
Remember that the hash isn't copied -- the header is made into a ref that points to the same underlying data. To get a real copy without
making any assumptions about the underlying data structure, you should:
use PDL::IO::Dumper;
$pdl->sethdr( deep_copy($h) );
(which is slow but general). It's considerably faster to do an elementwise copy if you know that all the elements happen to be scalars:
$h2={}; for $foo(keys %$h) { $h2->{$foo} = $$h{$foo}; }
$pdl->sethdr( $h2 );
The "sethdr" function must be given a hash reference or undef. For further information on the header, see gethdr and hdrcpy.
hdrcpy
switch on/off/examine automatic header copying
print "hdrs will be copied" if $a->hdrcpy;
$a->hdrcpy(1); # switch on hdr copying
$b = $a->sumover; # and $b will inherit $a's hdr
$a->hdrcpy(0); # and now make $a non-infectious again
Normally, the optional header of a piddle is not copied automatically in pdl operations. Switching on the hdrcpy flag using the "hdrcpy"
method will enable automatic hdr copying. Note that copying is by reference for efficiency reasons, which may not be What You Want if you
are modifying the header as you go. "hdrcpy" without an argument just returns the current setting of the flag.
AUTHOR
Copyright (C) Karl Glazebrook (kgb@aaoepp.aao.gov.au), Tuomas J. Lukka, (lukka@husc.harvard.edu) and Christian Soeller (c.soeller@auck-
land.ac.nz) 1997. Modified, Craig DeForest (deforest@boulder.swri.edu) 2002. All rights reserved. There is no warranty. You are allowed
to redistribute this software / documentation under certain conditions. For details, see the file COPYING in the PDL distribution. If this
file is separated from the PDL distribution, the copyright notice should be included in the file.
perl v5.8.0 2003-01-29 Core(3)