8 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
I have to mine the following sequence pattern from a large fasta file namely gene.fasta (contains multiple fasta sequences) along with the flanking sequences of 5 bases at starting position and ending position,
AAGCZ-N16-AAGCZ
Z represents A, C or G (Except T)
N16 represents any of the four... (3 Replies)
Discussion started by: dineshkumarsrk
3 Replies
2. Shell Programming and Scripting
I need assistance with following requirement, I am new to Unix.
I want to do the following task but stuck with file creation date(sysdate)
Following is the requirement
I need to create a script that will read the abc/xyz/klm folder and look for *.err files for that day’s date and then send an... (4 Replies)
Discussion started by: PreetArul
4 Replies
3. Shell Programming and Scripting
I have a file with some SQL query, I want to fetch only Table Name from that file line by line.
INPUT FILE
SELECT * FROM $SCHM.TABLENAME1;
ALTER TABLE $SCHM.TABLENAME1 ADD DateOfBirth date;
INSERT INTO $SCHM.TABLENAME1 (CustomerName, Country) SELECT SupplierName, Country FROM $SCHM.TABLENAME2... (2 Replies)
Discussion started by: Pratik Majithia
2 Replies
4. Shell Programming and Scripting
Hi All-
We have a file data as below with delimiter as |#|
10|#|20|#|ABC
13|#|23|#|PBC
If I want to cut the 2nd field out of this, below command is not working as multiple pipe is causing an issue , it seems
cut -f2 -d"|#|" <file_name>
can you please help to provide the correct command... (7 Replies)
Discussion started by: sureshg_sampat
7 Replies
5. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
6. Shell Programming and Scripting
i have list in file named sample.txt
eg
i want to cut the 3rd and 4th character i.e. 01,02,03....,24(max length is 24)
and i want to find the missing sequence .and display them
i.e. (15 Replies)
Discussion started by: sagar_1986
15 Replies
7. Shell Programming and Scripting
Hi,
I have following samp.txt file in unix.
samp.txt
01Roy2D3M000000
02Rad2D3M222222
.
.
.
.
10Mik0A2M343443
Desired Output
01Roy2A3M000000
02Rad2A3M222222
.
. (5 Replies)
Discussion started by: techmoris
5 Replies
8. Shell Programming and Scripting
find . -type f -name "*.sql" -print|xargs perl -i -pe 's/pattern/replaced/g'
this is simple logic to find and replace in multiple files & folders
Hope this helps.
Thanks
Zaheer (0 Replies)
Discussion started by: Zaheer.mic
0 Replies