Substitute first column based on second column


 
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# 1  
Old 05-06-2015
Substitute first column based on second column

Hi,

I have files with lines that look like

Code:
HSQ1008:141:D0CC8ACXX:3:1106:17255:124378       163     chr14

I'm wondering how I can output a file that appends /1 if the second column is 99 or 83 and a /2 if the second column is 163 or 147. Also I want to put \n + \n between each the second and third column, a \n after the first and last column, and an "@" in front of the very first column. So I would want the above line to become

Code:
@HSQ1008:141:D0CC8ACXX:3:1106:17255:124378/2
163
+
chr14

I appreciate any help!
# 2  
Old 05-06-2015
What have you tried so far?
 
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