Bsub command


 
Thread Tools Search this Thread
Top Forums UNIX for Dummies Questions & Answers Bsub command
# 1  
Old 04-09-2015
Bsub command

Hi everyone,
I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me?
# 2  
Old 04-09-2015
Neither bsub nor bsub-o are common utilities found on UNIX or Linux systems. You can do a Google search for them just as easily as we can, and you would have a much better chance of determining if what you find is what you're looking for.
# 3  
Old 04-10-2015
IBM specific

Quote:
Originally Posted by Max_W
Hi everyone,
I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me?
Hello,

this command is IBM specific.

Have a look at :

IBM Knowledge Center

Regards
 
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Bsub job does not execute the script

Hello, When I'm trying to send bsub job using script that executes fine in command line, I get nothing. I do this for testing purposes, and the script scr_test is just one line: pwd > outfile So when I'm executing it in command line: $ ./scr_test it works fine producing the outfile with... (2 Replies)
Discussion started by: Sergey Aliev
2 Replies

2. Shell Programming and Scripting

How to create a variable without multiple concats in a perl scripts that makes a bsub?

The red text at the bottom represents the three lines I want to address. I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion... (3 Replies)
Discussion started by: jdilts
3 Replies

3. UNIX for Dummies Questions & Answers

Bsub array problem

I'm trying to run some computations on a cluster and have found that a bsub array is what I need.. So I tried running a simple example I found bsub -J "myArray" echo "Job \$LSB_JOBINDEX" This should create 10 jobs that output "Job 1" "Job 2" .. etc. But when I run this from afs space I get... (1 Reply)
Discussion started by: ehj
1 Replies

4. UNIX for Dummies Questions & Answers

passing command output from one command to the next command in cshell

HI Guys, I hope you are well. I am trying to write a script that gets executed every time i open a shell (cshell). I have two questions about that 1) I need to enter these commands $ echo $DISPLAY $ setenv $DISPLAY output_of_echo_$display_command How can i write a... (2 Replies)
Discussion started by: kaaliakahn
2 Replies

5. UNIX for Dummies Questions & Answers

qsub equivalent of bsub command

"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \"" Can anybody please tell me the qsub equivalent for this command? ---------- Post updated at 06:48 AM... (0 Replies)
Discussion started by: chaudhary3031
0 Replies

6. Shell Programming and Scripting

Passing a variable to #BSUB -n in a LSF file

Hi There! I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like: set NPROC = 10 and later on call BSUB using something like: #BSUB -n $NPROC unfortunately for me, this throws an error: ... (4 Replies)
Discussion started by: lrayo
4 Replies

7. Shell Programming and Scripting

Node selection with bsub

Hi! I am currently using the bsub command to submit jobs to a cluster and I need to specify the name of the node to which i want the job sent. What do I add to my .pbs script to specify this? Cheers (0 Replies)
Discussion started by: mancino
0 Replies

8. Shell Programming and Scripting

Need help! command working ok when executed in command line, but fails when run inside a script!

Hi everyone, when executing this command in unix: echo "WM7 Fatal Alerts:", $(cat query1.txt) > a.csvIt works fine, but running this command in a shell script gives an error saying that there's a syntax error. here is content of my script: tdbsrvr$ vi hc.sh "hc.sh" 22 lines, 509... (4 Replies)
Discussion started by: 4dirk1
4 Replies

9. UNIX for Dummies Questions & Answers

Writing a script to work sequentially with bsub

Hi, I am REALLY a newbie of Unix: hope this question is not too odd. Here is my problem: I have to submit jobs to a remote platform (an IBM BCX/5120). To submit I have tobsub < filename.jcf and the .jcf file has usually the following content: #!/bin/bash #BSUB <commands of the bsub>... (1 Reply)
Discussion started by: silky
1 Replies

10. SuSE

inconsistent ls command display at the command prompt & running as a cron job

Sir, I using the following commands in a file (part of a bigger script): #!/bin/bash cd /opt/oracle/bin ls -lt | tail -1 | awk '{print $6}' >> /tmp/ramb.out If I run this from the command prompt the result is: 2007-05-16 if I run it as a cron job then... (5 Replies)
Discussion started by: rajranibl
5 Replies
Login or Register to Ask a Question