10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Hi
How can I extract sequences from a fasta file with respect a certain criteria? The beginning of my file (containing in total more than 1000 sequences) looks like this:
>H8V34IS02I59VP
SDACNDLTIALLQIAREVRVCNPTFSFRWHPQVKDEVMRECFDCIRQGLG
YPSMRNDPILIANCMNWHGHPLEEARQWVHQACMSPCPSTKHGFQPFRMA... (6 Replies)
Discussion started by: Marion MPI
6 Replies
2. Shell Programming and Scripting
Hi all!
I would like to solve a problem but I have no clue of how do it!I will be grateful if someone could help me!
Briefly I have a big file like this:
>ENSMUSG00000000204 | ENSMUST00000159637
GGCGAGGCTTACGCCATTTTACCTCAGCGAGCATTCATAAAGCTGCGAGCATTCATACAG
>ENSMUSG00000000204 |... (3 Replies)
Discussion started by: giuliangiuseppe
3 Replies
3. Shell Programming and Scripting
Hi ,
i need to display only one of duplicated values and merged them in one record only when tag started with 3100.2.128.8
3100.2.97.1=192.168.0.12
3100.2.128.8=418/66/03e9/0044801
3100.2.128.8=418/66/03ea/0044601
3100.2.128.8=418/66/03e9/0044801
3100.2.128.8=418/66/03ea/0044601... (5 Replies)
Discussion started by: OTNA
5 Replies
4. Shell Programming and Scripting
Hi, I have the following file:
LOG:015608::ERR:2310:map_spsrec:Invalid parameter
LOG:015608::ERR:2471:map_dgdrec:Invalid parameter
LOG:015608::ERR:2487:map_nnmrec:Invalid number
LOG:015608::ERR:2310:map_nmrec:Invalid number
LOG:015608::ERR:2438:map_nmrec:Invalid number
As a delimiter I... (2 Replies)
Discussion started by: apenkov
2 Replies
5. UNIX for Dummies Questions & Answers
Hi,
I have a tab-delimited file as follows:
1 1 2 2 3 3 4 4
a a b b c c d d
5 5 6 6 7 7 8 8
e e f f g g h h
9 9 10 10 11 11 12 12
i i j j k k l l
13 13 14 14 15 15 16 16
m m n n o o p p
The output I need is:
1 1 a a 5 5 e e 9 9 i i 13... (5 Replies)
Discussion started by: mvaishnav
5 Replies
6. Shell Programming and Scripting
Hi, I have an output like this:
#CMD
Output:
user1
user2
user3
user4
How can I select ONLY the first row?
Thanks (4 Replies)
Discussion started by: iga3725
4 Replies
7. Shell Programming and Scripting
I have . dat file which contains data in a specific format:
0 3 892 921 342
1 3 921 342 543
2 4 817 562 718 765
3 3 819 562 717 761
i need to compare each field in a row with another field of the same column but different row and cont the... (8 Replies)
Discussion started by: Abhik
8 Replies
8. Programming
Hello there.
I've got the query like that
SELECT count(tour_id) AS cnt
FROM orders
JOIN tours
ON orders.tour_id=tours.id
GROUP BY tour_id
The result Is
cnt
1
4
2
1
1
Now i have to select all records with minimum values in field "cnt"
MySQL function min() returns only one.... (2 Replies)
Discussion started by: Trump
2 Replies
9. Shell Programming and Scripting
Hi ,
I have a similar problem.
Please can anyone help me with a shell script or a perl.
I have a flat file like this
fruit country
apple germany
apple india
banana pakistan
banana saudi
mango india
I want to get a output like
fruit country
apple ... (7 Replies)
Discussion started by: smalya
7 Replies
10. UNIX for Dummies Questions & Answers
How do I create a script that provides a count of distinct values of a particular field in a file utilizing commonly available UNIX commands (sh or awk)?
Field1|Field2|Field3|Field4
AAA|BBB|CCC|DDD
111|222|333|777
AAA|EEE|ZZZ|EEE
111|555|333|444
AAA|EEE|CCC|DDD
111|222|555|444
For... (2 Replies)
Discussion started by: Refresher
2 Replies