10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
I have a two file as shown below,
file:1
>Contig_152_415 (REVERSE SENSE)
>Contig_152_420 (REVERSE SENSE)
>Contig_152_472 (REVERSE SENSE)
>Contig_152_484 (REVERSE SENSE)
File:2
>Contig_152:49081-49929
ATCGAGCAGCGCCGCGTGCGGTGCACCCTTGTGCAGATCGGGAGTAACCACGCGCACGGC... (2 Replies)
Discussion started by: dineshkumarsrk
2 Replies
2. Shell Programming and Scripting
Hi All,
I am looking to join two files where column 1 of file A matches with column 1 of file B and column 5 of files A matches with column 2 of file B. After joining the files based on above condition, out should contain entire line of file A and column 3, 4 and 5 of file B.
Here is sample... (8 Replies)
Discussion started by: angshuman
8 Replies
3. UNIX for Dummies Questions & Answers
Hi,
I am facing issues while accomplishing below task.
We have two files Test1.txt and Test2.txt. We have to match 1st column of Test1.txt file with 2nd column of Test2.txt and then merge 2nd file with the 1st file. In the output we should select column 1 and 2 from the 1st file and column 1... (5 Replies)
Discussion started by: Prathmesh
5 Replies
4. Shell Programming and Scripting
Hi all, I'm pretty much a newbie to UNIX. I would appreciate any help with UNIX coding on comparing two large csv files (greater than 10 GB in size), and output a file with matching columns.
I want to compare file1 and file2 by 'id' and 'chain' columns, then extract exact matching rows'... (5 Replies)
Discussion started by: bkane3
5 Replies
5. Shell Programming and Scripting
Hi,
I need to join two files together with one common value in a column. I think I can use awk or join or a combination but I can't quite get it.
Basically my data looks like this, with the TICKER columns matching up in each file
File1
TICKER,column 1, column, 2, column, 3, column 4
... (6 Replies)
Discussion started by: unkleruckus
6 Replies
6. Shell Programming and Scripting
Hi!
I need to merge two files when col1 (x:x:x) matching and adds second column from file1.txt.
# cat 1.txt
aaa;a12
bbb;b13
ccc;c33
ddd;d55
eee;e11
# cat 2.txt
bbb;b55;34444;d55
aaa;a15;35666;a44
I try with this awk and I get succesfully first column from 1.txt:
# awk -F";"... (2 Replies)
Discussion started by: fhluque
2 Replies
7. Shell Programming and Scripting
Hello,
I have two files as following:
#bin chrom chromStart chromEnd name score strand observed
585 chr2 29442 29443 rs4637157 0 + C/T
585 chr2 33011 33012 rs13423995 0 + A/G
585 chr2 34502 34503 rs13386087 0 + ... (2 Replies)
Discussion started by: Homa
2 Replies
8. UNIX for Dummies Questions & Answers
Hi to all,
I have two separated files:
FILE1
"V1" "V2" "V3"
Mary James Nicole
Robert Francisco Sophie
Nancy Antony Matt
Josephine Louise Rose
Mark Simon
Charles
FILE2
"V1" "V2" "V3"... (2 Replies)
Discussion started by: eleonoral
2 Replies
9. Shell Programming and Scripting
Hey,
I have two files that have exactly the same format. They are both tab-delimited and contain 12 columns. However the # of rows vary. What I want to do is match columns # 5,6 and 7 between the two files. If they do match exactly (based on numbers) then I want the whole row from file 2 to... (1 Reply)
Discussion started by: phil_heath
1 Replies
10. UNIX for Dummies Questions & Answers
I have two files. One has:
ID# 0 a b c d e f g h i j k....................~2 milion columns
ID# 0 l m n o p q r s t u v....................~2 milion columns
.
.
.
~6000 lines
Other has:
ID# 1
or
ID# 2
.
.
~6000 lines (2 Replies)
Discussion started by: polly_falconer
2 Replies