9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I can not figure out why there are 56,548 unique entries in test.bed. However, perl and awk see only 56,543 and that # is what my analysis see's as well. What happened to the 5 missing? Thank you :).
The file is attached as well.
cmccabe@DTV-A5211QLM:~/Desktop/NGS/bed/bedtools$wc -l... (2 Replies)
Discussion started by: cmccabe
2 Replies
2. Shell Programming and Scripting
How could i take an input file and split the numeric values from the alpha values (123 vs abc) to distinc columns, and if the source is blank to keep it blank (null) in both of the new columns:
So if the source file had a column like:
Value:
|1 |
|2.3|
| |
|No|
I would... (7 Replies)
Discussion started by: driftlogic
7 Replies
3. UNIX for Dummies Questions & Answers
Hello
Im new treat me nicely, I have a headache :)
I have a script that seemed to work now it doesnt anyway, the last part is adding counts of unique items in a csv file eg
05492U34 38
05492U34 47
two columns, (many different values like this in file)
i want... (7 Replies)
Discussion started by: aniquebmx
7 Replies
4. Shell Programming and Scripting
Hi, I have the following file:
LOG:015608::ERR:2310:map_spsrec:Invalid parameter
LOG:015608::ERR:2471:map_dgdrec:Invalid parameter
LOG:015608::ERR:2487:map_nnmrec:Invalid number
LOG:015608::ERR:2310:map_nmrec:Invalid number
LOG:015608::ERR:2438:map_nmrec:Invalid number
As a delimiter I... (2 Replies)
Discussion started by: apenkov
2 Replies
5. UNIX for Dummies Questions & Answers
Hi !
input:
A|B|C|D
A|F|C|E
A|B|I|C
A|T|I|B
As the title of the thread says, I would need to get:
1|3|2|4
I tried different variants of this command, but I don't manage to obtain what I need:
gawk 'BEGIN{FS=OFS="|"}{for(i=1; i<=NF; i++) a++} END {for (b in a) print b}' input
... (2 Replies)
Discussion started by: beca123456
2 Replies
6. Shell Programming and Scripting
Hi,
I have a file like this
ACC 2 2 21 aaa
AC 443 3 22 aaa
GCT 76 1 33 xxx
TCG 34 2 33 aaa
ACGT 33 1 22 ggg
TTC 99 3 44 wee
CCA 33 2 33 ggg
AAC 1 3 55 ddd
TTG 10 1 22 ddd
TTGC 98 3 22 ddd
GCT 23 1 21 sds
GTC 23 4 32 sds
ACGT 32 2 33 vvv
CGT 11 2 33 eee
CCC 87 2 44... (1 Reply)
Discussion started by: polsum
1 Replies
7. Shell Programming and Scripting
I have a text file names test2 with 3 columns as below . We have to retrieve the distinct values (not duplicate) from 2nd column and display. I have used the below command but giving some error.
NS3303 NS CRAFT LTD
NS3303 NS CHIRON VACCINES LTD
NS3303 NS ALLIED MEDICARE LTD
NS3303 NS... (16 Replies)
Discussion started by: shirdi
16 Replies
8. Shell Programming and Scripting
I'm looking to write a sample shell script that counts the number of distinct words in a text file given as Argument.
Remark: White space characters are spaces, tabs, form feeds, and new lines.
JUST with this commands tr, sort, grep. wc.
Thanks. (14 Replies)
Discussion started by: Net-Man
14 Replies
9. Solaris
Hello experts,
I do -
$ ls -lhtr logs2007*
Is it possible that i can get the results of-
totals size in MB/KB for ALL "logs2007*"
note: in the same directory I have "logs2006*" & "logs2007*" files. (4 Replies)
Discussion started by: thepurple
4 Replies