The name of each sequence is delimited by a ">" and followed by a newline. I'm trying to figure out how iterate through all of my files with a ".fa" extension and create a single tab-delimited table with the name of the sequence (tab) and the name of the file it came from. Like so:
xyzsequence file1
abcsequence file1
somsequence file2
etc...
Can anyone point me in the right direction?
Many thanks,
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A bit lengthy with a 2nd example file:
Maybe someone can optimize it so that the tr will not be needed and inside the awk - I was currently not able to do it heh.
Thanks a million! I didn't want the actual sequence, just the sequence name, so I used some of your code and bits of other things that I pieced together. This is hideous and long (I know ) but it works. Next week I'll try to learn to pipe.
Hi Friends,
I am back for the second round today - :D
My input text file is this way
Home
friends
friendship meter
Tools
Mirrors
Downloads
My Data
About Us
Help
My own results
BLAT Search Results
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Here is what is looks like:
ab1ba67c331a3d731396322fad8dd71a3b627f89359827697645c806091c40b9
0.2
812a3c3684310045f1cb3157bf5eebc4379804e98c82b56f3944564e7bf5dab5
0.6
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###XYZABC####
############
int = 4
char = 1
float = 1
.
.
############
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Hi all,
Very first post on this forums, hope you can help me with this scripting task.
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