The name of each sequence is delimited by a ">" and followed by a newline. I'm trying to figure out how iterate through all of my files with a ".fa" extension and create a single tab-delimited table with the name of the sequence (tab) and the name of the file it came from. Like so:
xyzsequence file1
abcsequence file1
somsequence file2
etc...
Can anyone point me in the right direction?
Many thanks,
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Thanks a million! I didn't want the actual sequence, just the sequence name, so I used some of your code and bits of other things that I pieced together. This is hideous and long (I know ) but it works. Next week I'll try to learn to pipe.
Hi Friends,
I am back for the second round today - :D
My input text file is this way
Home
friends
friendship meter
Tools
Mirrors
Downloads
My Data
About Us
Help
My own results
BLAT Search Results
ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND ... (7 Replies)
I'm totally stumped with how to handle this huge text file I'm trying to deal with. I really need some help!
Here is what is looks like:
ab1ba67c331a3d731396322fad8dd71a3b627f89359827697645c806091c40b9
0.2
812a3c3684310045f1cb3157bf5eebc4379804e98c82b56f3944564e7bf5dab5
0.6
0.6... (3 Replies)
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###XYZABC####
############
int = 4
char = 1
float = 1
.
.
############
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I have a ramfs_size file generated with du -s
cat ramfs_size
64512
I want to replace the linux .config's ramdisk size with the above value
CONFIG_BLK_DEV_RAM_SIZE=73728
Right now I'm doing something dumb like: ... (3 Replies)
Hi all,
Very first post on this forums, hope you can help me with this scripting task.
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Hi Guys,
I am needing some help writing a shell script to replace the following in a text file
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Any ideas?
1)loop through text file
2)extract everything between SOL and EOL
3)output files, for example: 123.txt and 124.txt for the file below
So far I have: sed -n "/SOL/,/EOL/{p;/EOL/q;}" file
Here is an example of my text file.
SOL-123.go
something goes here
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Hi,
Im trying to update some properties files with text from another file:
file1
user=xyz
file2
user=
after script
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Hey Guys.I am a newbie on Bash Shell Scripting and Perl.And I have a question about file parsing.
I have a log file which contains reports about a communication device.I need to take some of the reports from the log file.Its hard to explain the issue.but shortly I can say that, the reports has a... (2 Replies)
08-07-2009
) but it works. Next week I'll try to learn to pipe.