Visit The New, Modern Unix Linux Community


awk to convert dict file to table format


 
Thread Tools Search this Thread
Top Forums UNIX for Beginners Questions & Answers awk to convert dict file to table format
# 1  
awk to convert dict file to table format

HI
I have a file that looks like below

Code:
abc
{Seq('GATAGC', SingleLetterAlphabet()): 1, Seq('ATAGCG', SingleLetterAlphabet()): 1, Seq('TAGCGG', SingleLetterAlphabet()): 1}
BBC
{Seq('AGGATA', SingleLetterAlphabet()): 1, Seq('GGATAG', SingleLetterAlphabet()): 1, Seq('GATAGC', SingleLetterAlphabet()): 1, Seq('ATAGCG', SingleLetterAlphabet()): 1, Seq('TAGCGG', SingleLetterAlphabet()): 1}
CCB
{Seq('GACGGA', SingleLetterAlphabet()): 1, Seq('ACGGAT', SingleLetterAlphabet()): 1, Seq('CGGATA', SingleLetterAlphabet()): 1, Seq('GGATAG', SingleLetterAlphabet()): 1, Seq('GATAGC', SingleLetterAlphabet()): 1, Seq('ATAGCG', SingleLetterAlphabet()): 1, Seq('TAGCGG', SingleLetterAlphabet()): 1}

I wanted to get something like:
Code:
abc GATAGC
abc ATAGCG
abc TAGCGG
BBC AGGATA
---------------

I have been trying to get the solution in python but wth less success. Is there any easy way to do it in awk?
# 2  
Welcome biofreek,

Of course there is a way to do what you want in just about every programming language, including awk.

However, our mission here is to help you help yourself and your mission here is to show all your work and your scripts and what you have written (tried) and any and all error messages you experienced.
# 3  
how about:
Code:
awk -F"'" 'FNR%2{f1=$0;next} {for(i=2;i<=NF;i+=2) print f1, $i}' myFile

This User Gave Thanks to vgersh99 For This Post:

Previous Thread | Next Thread
Thread Tools Search this Thread
Search this Thread:
Advanced Search

Test Your Knowledge in Computers #319
Difficulty: Medium
The open source program Redis is a relational database server.
True or False?

8 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Convert rows into columns and create table with awk

Hello I've four fields . They are First Name, Last Name, Age, Country. So when I run a Unix command, I get below output with these fields comes every time in different order as you can see. Some times first name is the first row and other time last name is first row in the output and etc etc..... (9 Replies)
Discussion started by: rprpr
9 Replies

2. Shell Programming and Scripting

awk to convert table-by-row to matrix table

Hello, I need some help to reformat this table-by-row to matrix? infile: site1 A:o,p,q,r,s,t site1 C:y,u site1 T:v,w site1 -:x,z site2 A:p,r,t,v,w,z site2 C:u,y site2 G:q,s site2 -:o,x site3 A:o,q,s,t,u,z site3 C:y site3 T:v,w,x site3 -:p,routfile: SITE o p q r s t v u w x y... (7 Replies)
Discussion started by: yifangt
7 Replies

3. Shell Programming and Scripting

convert the output in table format

Hi All, I have a output like below values val1=test.com val2=10.26.208.11 val3=en1 val4=test-priv1.com val5=192.168.3.4 val6=en2 val7=test-priv2.com val8=192.168.4.4 val9=en3 val10=test-vip.com val11=10.26.208.9 val12=$val3 I want to convet this output values into below... (1 Reply)
Discussion started by: kamauv234
1 Replies

4. Programming

awk script to convert a text file into csv format

hi...... thanks for allowing me to start a discussion i am collecting usb usage details of all users and convert it into csv files so that i can export it into some database.. the input text file is as follows:- USB History Dump by nabiy (c)2008 (1) --- Kingston DataTraveler 130 USB... (2 Replies)
Discussion started by: certteam
2 Replies

5. UNIX for Dummies Questions & Answers

Convert UNIX file format to PC format

Hi All, Is there any way to convert a file which is in UNIX format to a PC format.... Flip command can be used , apart form this command can we have any other way.... like usinf "awk" etc ..... main purpose of not using flip is that my Kshell doesnot support this comamnd.... (1 Reply)
Discussion started by: Samtel
1 Replies

6. UNIX for Dummies Questions & Answers

To convert multi format file to a readable ascii format

Hi I have a file which has ascii , binary, binary decimal coded,decimal & hexadecimal data with lot of special characters (like öƒ.ƒ.„İİ¡Š·œƒ.„İİ¡Š· ) in it. I want to standardize the file into ASCII format & later use that as source . Can any one suggest a way a logic to convert such... (5 Replies)
Discussion started by: gaur.deepti
5 Replies

7. UNIX for Dummies Questions & Answers

Convert UTF8 Format file to ANSI format

:confused: Hi i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error Function i used it as $ iconv -f UTF8 -t ANSI filename Error iam getting is NOT Supported UTF8 to ANSI please some help me out on... (9 Replies)
Discussion started by: rajreddy
9 Replies

8. UNIX for Advanced & Expert Users

Convert UTF8 Format file to ANSI format

:) Hi i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error Function i used it as $ iconv -f UTF8 -t ANSI filename Error iam getting is NOT Supported UTF8 to ANSI please some help me out on this.........Let me... (1 Reply)
Discussion started by: rajreddy
1 Replies

Featured Tech Videos