Transpose a sequence of symbols from row to one columns (no separators))


 
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# 1  
Old 01-24-2018
Transpose a sequence of symbols from row to one columns (no separators))

Hi all,

I have a data file. It contains one header line followed by a new line which is one row of different characters without separators (charahters can be dots, dash, capital and small letters). What I need is ignoring header line to transpose these characters so they form a column. So, from this:

Code:
>HEADER
......................................ATCTabssdfjjdfFJKSHHA----LIJUOSasjdhjskdhflaiwekfJDHFHBLKSHJNLMLKDJLJLKSMLSKDFHJERJEI

I need to make this:

Code:
>XXXX
.
.
.
.
.
.
.
.
.
.
.
A
T
C
T

Thank you!!

Last edited by Scrutinizer; 01-24-2018 at 01:41 PM.. Reason: code tags
# 2  
Old 01-24-2018
Try:
Code:
sed '/>/!s/./&\
/g' file

or with GNU sed:
Code:
sed '/>/!s/./&\n/g file

This User Gave Thanks to Scrutinizer For This Post:
# 3  
Old 01-24-2018
Code:
sed '2,$s/./&\n/g' file

This User Gave Thanks to rdrtx1 For This Post:
# 4  
Old 01-26-2018
Thank you a lot, Scrutinizer and rdrtx1, for ur quick help!!

good day!
# 5  
Old 02-08-2018
Code:
echo $YourData | sed 's/./\0\n/g'

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