File comaprsons for the Huge data files ( around 60G) - Need optimized and teh best way to do this


 
Thread Tools Search this Thread
Top Forums UNIX for Advanced & Expert Users File comaprsons for the Huge data files ( around 60G) - Need optimized and teh best way to do this
# 8  
Old 10-25-2018
Quote:
Originally Posted by kartikirans
grep -F -x -v -f file2 file1 ?? or any other optimization command
sounds about right.
Just remember - whatever you do, comparing 60G files will be slow...
Test this on a smaller chunks to see if you're getting the desired results first.
# 9  
Old 10-31-2018
Hi kartikirans,

I'd be tempted to look at comm -3 ${file1} ${file2} this will suppress lines common to ${file1} and ${file2} later versions of comm don't require the files to be sorted.

Regards

Gull04
# 10  
Old 10-31-2018
One additional question: what means "non-matching lines"?

- only Lines in file1 which are not in file2? or
- plus lines in file2 which are not in file1?

bakunin
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. UNIX for Advanced & Expert Users

Need Optimization shell/awk script to aggreagte (sum) for all the columns of Huge data file

Optimization shell/awk script to aggregate (sum) for all the columns of Huge data file File delimiter "|" Need to have Sum of all columns, with column number : aggregation (summation) for each column File not having the header Like below - Column 1 "Total Column 2 : "Total ... ...... (2 Replies)
Discussion started by: kartikirans
2 Replies

2. UNIX for Dummies Questions & Answers

File comparison of huge files

Hi all, I hope you are well. I am very happy to see your contribution. I am eager to become part of it. I have the following question. I have two huge files to compare (almost 3GB each). The files are simulation outputs. The format of the files are as below For clear picture, please see... (9 Replies)
Discussion started by: kaaliakahn
9 Replies

3. Shell Programming and Scripting

Help- counting delimiter in a huge file and split data into 2 files

I’m new to Linux script and not sure how to filter out bad records from huge flat files (over 1.3GB each). The delimiter is a semi colon “;” Here is the sample of 5 lines in the file: Name1;phone1;address1;city1;state1;zipcode1 Name2;phone2;address2;city2;state2;zipcode2;comment... (7 Replies)
Discussion started by: lv99
7 Replies

4. Shell Programming and Scripting

Three Difference File Huge Data Comparison Problem.

I got three different file: Part of File 1 ARTPHDFGAA . . Part of File 2 ARTGHHYESA . . Part of File 3 ARTPOLYWEA . . (4 Replies)
Discussion started by: patrick87
4 Replies

5. Shell Programming and Scripting

Problem running Perl Script with huge data files

Hello Everyone, I have a perl script that reads two types of data files (txt and XML). These data files are huge and large in number. I am using something like this : foreach my $t (@text) { open TEXT, $t or die "Cannot open $t for reading: $!\n"; while(my $line=<TEXT>){ ... (4 Replies)
Discussion started by: ad23
4 Replies

6. Shell Programming and Scripting

Splitting the Huge file into several files...

Hi I have to write a script to split the huge file into several pieces. The file columns is | pipe delimited. The data sample is as: 6625060|1420215|07308806|N|20100120|5572477081|+0002.79|+0000.00|0004|0001|......... (3 Replies)
Discussion started by: lakteja
3 Replies

7. Shell Programming and Scripting

Split a huge data into few different files?!

Input file data contents: >seq_1 MSNQSPPQSQRPGHSHSHSHSHAGLASSTSSHSNPSANASYNLNGPRTGGDQRYRASVDA >seq_2 AGAAGRGWGRDVTAAASPNPRNGGGRPASDLLSVGNAGGQASFASPETIDRWFEDLQHYE >seq_3 ATLEEMAAASLDANFKEELSAIEQWFRVLSEAERTAALYSLLQSSTQVQMRFFVTVLQQM ARADPITALLSPANPGQASMEAQMDAKLAAMGLKSPASPAVRQYARQSLSGDTYLSPHSA... (7 Replies)
Discussion started by: patrick87
7 Replies

8. Shell Programming and Scripting

insert a header in a huge data file without using an intermediate file

I have a file with data extracted, and need to insert a header with a constant string, say: H|PayerDataExtract if i use sed, i have to redirect the output to a seperate file like sed ' sed commands' ExtractDataFile.dat > ExtractDataFileWithHeader.dat the same is true for awk and... (10 Replies)
Discussion started by: deepaktanna
10 Replies

9. Shell Programming and Scripting

How to extract data from a huge file?

Hi, I have a huge file of bibliographic records in some standard format.I need a script to do some repeatable task as follows: 1. Needs to create folders as the strings starts with "item_*" from the input file 2. Create a file "contents" in each folders having "license.txt(tab... (5 Replies)
Discussion started by: srsahu75
5 Replies

10. UNIX for Dummies Questions & Answers

search and grab data from a huge file

folks, In my working directory, there a multiple large files which only contain one line in the file. The line is too long to use "grep", so any help? For example, if I want to find if these files contain a string like "93849", what command I should use? Also, there is oder_id number... (1 Reply)
Discussion started by: ting123
1 Replies
Login or Register to Ask a Question