10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I'm working on a SGE cluster and trying to echo the variables passed to the qsub command.
My script is as follows
#$ -pe make 10
if ; then
echo "Variable is not set"
echo "Variable says: $StatedUserName"
and I run the... (1 Reply)
Discussion started by: nans
I have few old V210/V240, running Solaris-8. I am trying to find, number of physical CPUs, number of cores and number of virtual processors. psrinfo is giving me confusing status.
It looks like, there are 2 physical CPUs, but psrinfo -p shows me just 1
bash-2.03$ psrinfo -v
Status of... (4 Replies)
Discussion started by: ron323232
3. Shell Programming and Scripting
I'm trying to edit my working bash script to an SGE script in order to submit it as a job to the cluster.
Currently I have:
# Perform fastqc on files in a specified directory.
for ((j=1; j <=17; j++))
... (0 Replies)
Discussion started by: una1992
4. Shell Programming and Scripting
I have the following code to count the number of how many times the name occurred in one file. The code is working fine and the output is exactly what I want. The problem is the real code has more than 50 names in function listname which cause function name to have more than 50 case ,and function... (14 Replies)
Discussion started by: samsan
5. Shell Programming and Scripting
I have created a script which will show the errors from a log file in between a particular section.
v1=$(sed -n "/Main Report/,/Main Report End/p" input | grep -i 'Unable to find'
v2=$(sed -n "/Main Report/,/Main Report End/p" input | grep -i 'Unable to add'
echo... (5 Replies)
Discussion started by: Vikram_Tanwar12
6. Shell Programming and Scripting
I am very new to scripting and I wanted to write a unix shell script which can give me,
1)number of cpu's in a box
2)number of cores per cpu
3)total number of cores in abox (ie multiplying 1&2)
I am also trying to figure out how to check if hyper-threading is enabled in the... (8 Replies)
Discussion started by: steven12
7. Shell Programming and Scripting
I have the following SGE submission (HPC calculation) script, which is just a Bash script:
#$ -S /bin/bash
#$ -l h_rt=1:00:0
#$ -l mem=4G
#$ -N XXX
#$ -pe qlc 24
#$ -P XXX
#$ -wd /home/uccaxxx/Scratch/222PdT/3vac/c0001/
mpirun -m $TMPDIR/machines -np $NSLOTS... (2 Replies)
Discussion started by: crunchgargoyle
8. UNIX for Dummies Questions & Answers
I'm a new guy doing some quntum calculation with gaussian on my rocks clusters. Recently, my cluster upgraded to rocks 5.3, but something strange happened. Everything goes correct except a serious problem. when I summit my gaussian job with script to sge queue, the job does run,... (0 Replies)
Discussion started by: liuzhencc
9. UNIX for Dummies Questions & Answers
Can anyone please let me know how do I reduce files into a specific number of files by cat'ing files?
15 files must be reduced to 1 or 5 or 9 (possible values 1 to 14) (5 Replies)
Discussion started by: aryanbelank
I have an E15K running at 60% CPU usage on 16 CPUs.
I need to get rid of 6 CPUs, which is 38%.
Does that mean my CPU usage will go up to 98%?
I suspect the relationship between CPU numbers and usage is a bit more complicated. Can anyone give me any guidance on this please?
TIA (0 Replies)
Discussion started by: disturbed_uk