TFBS::PatternGen::Gibbs::Motif(3pm)			User Contributed Perl Documentation		       TFBS::PatternGen::Gibbs::Motif(3pm)

NAME
TFBS::PatternGen::Gibbs::Motif - class for unprocessed motifs and associated numerical scores created by the Gibbs program SYNOPSIS
DESCRIPTION
TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed motifs and associated numerical scores created by the Gibbs program. You do not normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. They are created by running TFBS::PatternGen::Gibbs FEEDBACK
Please send bug reports and other comments to the author. AUTHOR - Boris Lenhard and Wynand Alkema Boris Lenhard <Boris.Lenhard@cgb.ki.se> Wynand Alkema <Wynand.Alkema@cgb.ki.se> APPENDIX
The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore. MAP Title : MAP Usage : my $map_score = $motif->MAP; Function: returns MAP score for the detected motif (This is a backward compatibility method. For consistency, you should use $motif->tag('MAP_score') instead Returns : float (a scalar) Args : none Other methods TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which inherits from TFBS::Matrix. Please consult the documentation of those modules for additional available methods. perl v5.14.2 2008-01-24 TFBS::PatternGen::Gibbs::Motif(3pm)

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