BP_HETEROGENEITY_TEST(1p) User Contributed Perl Documentation BP_HETEROGENEITY_TEST(1p)
NAME
heterogeneity_test - a test for distinguishing between selection and population expansion.
SYNOPSIS
heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mutnon nonsyn_mut_count -s/--smaplesize sample_size [-i/--iterations
iterations] [-o/--observed observed_D] [-v/--verbose] [--silent ] [-m/--method tajimaD or fuD] [--precision]
DESCRIPTION
This is an implementation of the Heterogenetity test as described in Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.
OPTIONS
Options in brackets above are optional
-s or --samplesize samplesize
-mut_1 or --mutsyn synonymous mutation count
-mut_2 or --mutnon nonsynonmous mutation count
-i or --iterations number of iterations
-o or --observed observed D
-m or --method tajimaD or fuD for Tajima's D or Fu and Li's D
-v or --verbose print out extra verbose messages
--silent Be extra quiet
--precision Level of precision - specify the number of digits
(default 4)
AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
For more information contact:
Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>
perl v5.14.2 2012-03-02 BP_HETEROGENEITY_TEST(1p)