10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hey guys,
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
#!/bin/bash -l
#SBATCH -p node
#SBATCH -A <projectID>
#SBATCH -n 16
#SBATCH -t 7-00:00:00
#SBATCH --mem=128GB
#SBATCH --mail-type=ALL... (1 Reply)
Discussion started by: @man
1 Replies
2. Shell Programming and Scripting
Hi ,
I have a XML file like below
file name : sample.xml
<?xml version="1.0"?>
<catalog>
<author>Rajini</author>
<title>XML Guide</title>
<Text> </Text>
<genre>Computer</genre>
<price>44.95</price>
</catalog>
<?xml version="1.0"?>
<catalog>
... (5 Replies)
Discussion started by: karthinvk
5 Replies
3. Shell Programming and Scripting
Hi all,
I have a many folders with zipped files in them. The zipped files are txt files from different folders. The txt files have the same names. If i try to
find . -type f -name "*.zip" -exec cp -R {} /myhome/ZIP \; it fails since the ZIP files from different folders have the same names and... (2 Replies)
Discussion started by: pmkenya
2 Replies
4. Shell Programming and Scripting
Hello There,
There are more than 1000 files in my log folder and i want to zip it to relase the space. But my method throwing
syntax error due to the multi part file name, how to overcome in this ?
ls -lart | grep "MDB_Kernel11.1_gwlog_SUN 22_09_2013" | awk '{print $9,$10,$11,$12}' | head... (8 Replies)
Discussion started by: gowthamakanthan
8 Replies
5. Shell Programming and Scripting
Hi,
I have a problem where I need to make this input:
nameRow1a,text1a,text2a,floatValue1a,FloatValue2a,...,floatValue140a
nameRow1b,text1b,text2b,floatValue1b,FloatValue2b,...,floatValue140b
look like this output:
nameRow1a,text1b,text2a,(floatValue1a - floatValue1b),(floatValue2a -... (4 Replies)
Discussion started by: nricardo
4 Replies
6. Shell Programming and Scripting
Hi,
I'm not very experienced in shell scripting and that's probably why I came across the following problem:
I do have several hundred pairs of text files (PF00x.spl and PF00x.shd) where the first file (PF00x.spl) needs to be renamed according a string that is included in the second file... (12 Replies)
Discussion started by: inCH
12 Replies
7. UNIX for Dummies Questions & Answers
I have a subdirectory which has many child directories and files in it. How can i delete them through a list (txt, rtf. xls , or any file extension) which is created by me. I can not manual delete one by one because it almost over 300 directory and over 4000 files. Any one know please help me? (5 Replies)
Discussion started by: cthinh
5 Replies
8. UNIX for Dummies Questions & Answers
Hi there,
not sure if I am in the right place but here is my question.
I have a file that is over 100mb and my host does not allow FTP of files above 100mb so I thought I would use a compression utility to compress it into smaller parts say 10mb each, upload them and then re-assemble them on... (7 Replies)
Discussion started by: gffb
7 Replies
9. Shell Programming and Scripting
Hi all,
Could you please guide me to write the shell script, to send a multi file as a attachement .
Thanks
Murugesh (1 Reply)
Discussion started by: Murugesh
1 Replies
10. Shell Programming and Scripting
Hi
Fields in Files 1,2,3,4 are pipe"|" separated.
Say I want to grep
col1 from File1
col3 from File2
col4 from File3
and print to File4 in the following order:
col3|col1|col4
what is the best way of doing this?
Thanks (2 Replies)
Discussion started by: vbshuru
2 Replies