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Geneious 4.5.4 (Default branch)
01-28-2009
Geneious is an integrated bioinformatics tool suite for manipulating, finding, sharing, and exploring biological data such as linear and circular DNA sequences, proteins, phylogenies, chromatograms, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis, restriction analysis, contig assembly, access to biological databases at NCBI and elsewhere (PubMed, Nucleotide, PopSet, SNP, Structure, PFAM, etc.), BLAST, and more. It includes an API for creating your own plugins.License: Other/Proprietary License with Free TrialChanges:|
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ASN2FSA(1) NCBI Tools User's Manual ASN2FSA(1) NAME
asn2fsa - convert biological sequence data from ASN.1 to FASTA SYNOPSIS
asn2fsa [-] [-A acc] [-D] [-E] [-H] [-L filename] [-T] [-a type] [-b] [-c] [-d path] [-e N] [-f path] [-g] [-h filename] [-i filename] [-k] [-l] [-m] [-o filename] [-p path] [-q filename] [-r] [-s] [-u] [-v filename] [-x str] [-z] DESCRIPTION
asn2fsa converts biological sequence data from ASN.1 to FASTA. OPTIONS
A summary of options is included below. - Print usage message -A acc Accession to fetch -D Use Dash for Gap -E Extended Seq-ids -H HTML spans -L filename Log file -T Use Threads -a type Input ASN.1 type: a Automatic (default) z Any e Seq-entry b Bioseq s Bioseq-set m Seq-submit t batch processing (suitable for official releases; autodetects specific type) -b Bioseq-set is Binary -c Bioseq-set is Compressed -d path Path to ReadDB Database -e N Line length (70 by default; may range from 10 to 120) -f path Path to indexed FASTA data -g Expand delta gaps into Ns -h filename Far component cache output file name -i filename Single input file (standard input by default) -k Local fetching -l Lock components in advance -m Master style for near segmented sequences -o filename Nucleotide Output file name -p path Path to ASN.1 Files -q filename Quality score output file name -r Remote fetching from NCBI -s Far genomic contig for quality scores -u Recurse -v filename Protein output file name -x str File selection substring (.ent by default) [String] -z Print quality score gap as -1 AUTHOR
The National Center for Biotechnology Information. SEE ALSO
asn2all(1), asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1). NCBI
2011-09-02 ASN2FSA(1)