massXpert mass spectrometry package 1.7.4 (Default branch)


 
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Old 04-03-2008
massXpert mass spectrometry package 1.7.4 (Default branch)

ImageThe massXpert software package is a massspectrometry environment for linear(bio-)polymers. It inherits all the innovations ofGNU polyxmass. It allows the detailed definitionof new polymer chemistries in the XpertDef module.These chemistry definitions are then used in thedesktop calculator-like mass calculator(XpertCalc) and in the sophisticated polymersequence editor and (bio-)chemical/massspectrometric simulations module (XpertEdit).Available simulations include polymer and monomerchemical modifications, polymer sequence cleavage,gas-phase fragmentation, m/z ratio calculations,and more.License: GNU General Public License (GPL)Changes:
This release implemented a new fragmentation specification method for fragmentation patterns where the monomer undergoing fragmentation has its lateral chain decomposed. This is particularly useful in nucleic acids chemistry where the nucleic base might be eliminated at the monomer undergoing fragmentation according to the pattern 'a'. The French translation was updated. A memory leak and bugs were fixed. The user manual was updated.Image

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MASSXPERT(7)						 Miscellaneous Information Manual					      MASSXPERT(7)

NAME
massxpert-doc - massXpert mass spectrometry software package (documentation) DESCRIPTION
This manual page documents briefly the massxpert-doc package. This package contains the user manual for the massxpert software package. The documentation is provided in the form of source code (LaTeX files) in the source package, and as a PDF-formatted user manual in the binary package. The files are located in /usr/share/doc/massxpert-doc. Note that the documentation is also available at http://www.massxpert.org. BIBLIOGRAPHICAL REFERENCE TO BE CITED
F. Rusconi (2009) massXpert 2: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spec- trometric data. Bioinformatics, 25:2741-2742. doi:10.1093/bioinformatics/btp504. SEE ALSO
massxpert(1) massxpert-data(7). AUTHOR
This manual page was written by Filippo Rusconi <rusconi-debian@laposte.net>. Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 3, published by the Free Software Foundation. On a Debian system the complete text of the GNU General Public License version 3 can be found in the file `- /usr/share/common-licenses/GPL-3'. September 2009 MASSXPERT(7)