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massXpert mass spectrometry package 1.7.4 (Default branch)

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Old 04-03-2008
massXpert mass spectrometry package 1.7.4 (Default branch)
ImageThe massXpert software package is a massspectrometry environment for linear(bio-)polymers. It inherits all the innovations ofGNU polyxmass. It allows the detailed definitionof new polymer chemistries in the XpertDef module.These chemistry definitions are then used in thedesktop calculator-like mass calculator(XpertCalc) and in the sophisticated polymersequence editor and (bio-)chemical/massspectrometric simulations module (XpertEdit).Available simulations include polymer and monomerchemical modifications, polymer sequence cleavage,gas-phase fragmentation, m/z ratio calculations,and more.License: GNU General Public License (GPL)Changes:
This release implemented a new fragmentation specification method for fragmentation patterns where the monomer undergoing fragmentation has its lateral chain decomposed. This is particularly useful in nucleic acids chemistry where the nucleic base might be eliminated at the monomer undergoing fragmentation according to the pattern 'a'. The French translation was updated. A memory leak and bugs were fixed. The user manual was updated.Image

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pkglab

pkglab(1)							   USER COMMANDS							 pkglab(1)

NAME

       pkglab - explore package repositories

SYNOPSIS

       pkglab [OPTION]...

DESCRIPTION

       Pkglab is an interactive, console-based environment to explore package repositories of package-based software distributions.

       A pkglab session typically starts by loading a package repository in one of the different formats understood pkglab. Then, pkglab can check
       given package combinations for co-installability according to inter-package relationships.

OPTIONS

       -architecture architecture
	      Default architecture to use when accessing packages from a package repository. By default the current host architecture is used.

       -history filename
	      Use the file filename to load and save command-line history. Defaults to $HOME/.pkglab-history.

       -script filename
	      Execute commands from the file filename.

       -merge waterway
	      Start by merging the archive found in waterway.

       -help, --help
	      Display basic help information.

SEE ALSO

       Pkglab can read package repositories in the dose format produced by ceve(1).

       The non-interactive tools edos-debcheck(1) and rpm-debcheck(1) use the same algorithm as pkglab for checking installability of packages.

AUTHORS

       Pkglab was written by Berke Durak and Jaap Boender for the EDOS and Mancoosi projects.

Version 1.4							  April 20, 2009							 pkglab(1)