10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I would like to take a fasta file formated like
>0001
agttcgaggtcagaatt
>0002
agttcgag
>0003
ggtaacctga
and use command line perl to move the all sample gt 8 in length to a new file. the result would be
>0001
agttcgaggtcagaatt
>0003
ggtaacctga
cat ${sample}.fasta | perl -lane... (2 Replies)
Discussion started by: jdilts
2 Replies
2. Shell Programming and Scripting
I have a file1 like
ID E2AK1_HUMAN Reviewed; 630 AA.
CC -!- SUBCELLULAR LOCATION: Host nucleus {ECO:0000305}.
ID E1A_ADEM1 Reviewed; 200 AA.
ID E1A_ADES7 Reviewed; 266 AA.
CC -!- SUBCELLULAR LOCATION: Host nucleus... (8 Replies)
Discussion started by: sammy777
8 Replies
3. UNIX for Dummies Questions & Answers
So, the beginning of my script will cat & grep a file with the output directed to a new file. The data I have in this file needs to be parsed, read and evaluated.
Basically, I need to identify the latest date/time stamp and then calculate whether or not it is within 15 minutes of the current... (1 Reply)
Discussion started by: hynesward
1 Replies
4. Shell Programming and Scripting
So, I want to read line-by-line a text file with unknown number of files....
So:
a=1
b=1
while ; do
b=`sed -n '$ap' test`
a=`expr $a + 1`
$here do something with b etc
done
the problem is that sed does not seem to recognise the $a, even when trying
sed -n ' $a p'
So, I cannot read... (3 Replies)
Discussion started by: hakermania
3 Replies
5. Shell Programming and Scripting
Hi,
After looking on different forums, I'm still in trouble to parse a parameters line received in KSH.
$* is equal to "/AAA:111 /BBB:222 /CCC:333 /DDD:444"
I would like to parse it and be able to access anyone from his name in my KSH after.
like
echo myArray => display 111
... (1 Reply)
Discussion started by: RickTrader
1 Replies
6. Shell Programming and Scripting
At first, give my best wish for all MOD and admins here. I"m learning bash shell program just for a month, not too much, not too little, but i must admire that i'm very bad at math and algorithm. :(
I want to do this :
Read the content of a file line by line and at each line, ask me want to... (3 Replies)
Discussion started by: madi3d8
3 Replies
7. Shell Programming and Scripting
I'm trying to make a script that will read variables line by line from a flatfile
i.e.
$ cat testfile
dbfoo sfoo prifoo poofoo bfoo osfoo
dbfoo2 sfoo2 prifoo2 poofoo2 bfoo2 osfoo2
$
The first pass of the script through the flatfile I want:
$1=dbfoo $2=sfoo... (6 Replies)
Discussion started by: loadnabox
6 Replies
8. Shell Programming and Scripting
Hello, I have a file with several lines
for example;
I need to extract a line radiusAuthServTotalAccessRequests.0 = 0
and I don't have line #s in the file.
I need to write a script to extract the above line, put a date beside it and parse this line out to another directory / file.
How... (5 Replies)
Discussion started by: xeniya
5 Replies
9. Shell Programming and Scripting
Hi Gurus,
I am using the following code to parse the output of a file. This code basically parses the file and adds | at the end of each field. But I am getting it wrong in some cases. I have explained it below
#----- parse output file, get each field position, -----
#----- and construct... (13 Replies)
Discussion started by: ragha81
13 Replies
10. Shell Programming and Scripting
Hi All,
Following is the sample file
and following is the op desired
that is the last entry of each unique first field is required.
My solution is as follows
However the original file has around a million entries and around a 100,000 uniques first fields, so this soln.... (6 Replies)
Discussion started by: gauravgoel
6 Replies