Today (Saturday) We will make some minor tuning adjustments to MySQL.

You may experience 2 up to 10 seconds "glitch time" when we restart MySQL. We expect to make these adjustments around 1AM Eastern Daylight Saving Time (EDT) US.

Permission denied question

Login or Register to Reply

Thread Tools Search this Thread
# 1  
Permission denied question

Dear forum members,

Below is my code, but I am getting permission denied when I try to run the script. Can someone explain what I am missing. I am using Mojave and try to run script on terminal.

read -p "amino acid: " AAA
if [ "$AAA" == "ALA" ] || [ "$AAA" == "VAL" ] || [ "$AAA" == "ARG" ] || [ "$AAA" == "ASN" ] || [ "$AAA" == "ASP" ] || 
   [ "$AAA" == "CYS" ] || [ "$AAA" == "GLY" ] || [ "$AAA" == "ILE" ] || [ "$AAA" == "LEU" ] || [ "$AAA" == "LYS" ] ||
   [ "$AAA" == "MET" ] || [ "$AAA" == "PHE" ] || [ "$AAA" == "PRO" ] || [ "$AAA" == "SER" ] || [ "$AAA" == "THR" ] || 
   [ "$AAA" == "TRP" ] || [ "$AAA" == "TYR" ] || [ "$AAA" == "HIS" ] || [ "$AAA" == "GLN" ] || [ "$AAA" == "GLU" ]
	for i in HS_*.pdb.txt; do
			cat $i | grep -o -i $AAA | wc -l
elif [ "$AAA" == 0 ]
		exit 1
	read -p "amino acid: " AAA

Here's the error:

-bash: ./ Permission denied
I will look forward to your responses.

# 2  
In order to help one needs to know the permissions of the directory containing your data files, the permissions of the data files and the permissions of the script itself + your ID ... Without that we cant do much...
Login or Register to Reply

Thread Tools Search this Thread
Search this Thread:
Advanced Search

10 More Discussions You Might Find Interesting

1. Ubuntu

Permission denied

Trying to get date into the txt file. It says Permission denied. echo $(date +%I:%M:%S_%D) >> /tmp/systemd_suspend_test_err.txt exec 2>> /tmp/systemd_suspend_test_err.txt if ; then # Do the thing you want before suspend here echo "we are suspending $(date +%I:%M:%S_%D)." elif ;... (5 Replies)
Discussion started by: drew77
5 Replies

2. UNIX for Dummies Questions & Answers

Permission denied

when i run echo "User” > /dev/tty5 why do i get permission denied? :confused: (2 Replies)
Discussion started by: chinababy
2 Replies

3. Linux

Permission denied

I am using korn shell When I type in Telnet on cmd line, I get message "cannot execute" How can I get permission to execute command ? In which dir is telnet located ? I looked in /usr/bin dir. but its not there Thanks (1 Reply)
Discussion started by: paramshamnani
1 Replies

4. Shell Programming and Scripting

Permission denied

I created a user so that when he logs in he will be directed to a menu /etc/passwd user1:x:115:1:Support -SysAd:/export/home/user1:/export/home/suppotrmenu/ However when I logged in remotely from another server by ssh user1@ , it saysexport/home/suppotrmenu/ (4 Replies)
Discussion started by: lhareigh890
4 Replies

5. Red Hat

Permission denied

Hi guys im new to this db i have a small prob while installing websphereportal6.1i think i was installed succesfully but the error im getting is while starting server. check this out # ./ -all Error loading: /usr/wps61/AppServer/java/jre/bin/classic/ cannot... (1 Reply)
Discussion started by: varma917989
1 Replies

6. UNIX for Dummies Questions & Answers

Permission denied

I would like to copy data from local mechine to cluster. Basically, I typed scp -r DVD/ acount@cluster:/ it shows Permission denied. Could anyone please give me a clue to write permission on cluster, please? The poperty of where on cluster I'd like to put is drwxr-xr-x Any idea would... (1 Reply)
Discussion started by: su_in99
1 Replies

7. UNIX for Dummies Questions & Answers

Why do I keep getting .:Permission denied?

I'll start off by saying that I know very little about Unix - however, I do know that I have a .profile file in my home directory, and that I should be able to invoke it by typing . profile. However, when I do this for ANY .filename, I get ".: Permission denied". I'm pretty sure that there is... (12 Replies)
Discussion started by: bbersani
12 Replies

8. UNIX for Dummies Questions & Answers

Basic question re. permission denied

Hi I have a folder with permissions like this: drwxr-xr-x 2 root root 4096 Mar 4 18:02 sites But when I try to cd to this directory as 'testuser' (member of testuser) I get Permission Denied. My understanding of permissions is that in this case other (say testuser) should be able to... (2 Replies)
Discussion started by: justinwyllie
2 Replies

9. UNIX for Dummies Questions & Answers

Permission Denied

I just started computer science at UW Milwaukee. When I access the university Solaris system from PuTTY, I get permission denied when I try to access the file I wrote. Now I really have no idea what I'm doing, I just don't understand why I get permission denied in my won directory. Thank You ... (0 Replies)
Discussion started by: howeezy
0 Replies

10. UNIX for Dummies Questions & Answers

permission denied??

i'm trying to set up my internet connection and i was told i need to edit the file /etc/ppp/pap-secrets but i get a permission denied message...why?? (6 Replies)
Discussion started by: justchillin
6 Replies

Featured Tech Videos