Shell Programming and Scripting

CNV.ID    Sample    Correlation    N.comp    Start.b    End.b    CNV.type    N.exons    BF    Reads.expected    Reads.observed    Reads.ratio    Gene
1    S10.Run.variant_ready    0.999411647    7    381    382    duplication    2    7.61    547    714    1.31    Gene1
2    S10.Run.variant_ready    0.999411647    7    1998    2016    duplication    19    133    14396    18691    1.3    Gene2
3    S11.Run.variant_ready    0.999286215    13    302    302    deletion    1    2.67    188    129    0.686    Gene3
4    S11.Run.variant_ready    0.999286215    13    341    341    deletion    1    4.58    548    386    0.704    Gene4
5    S11.Run.variant_ready    0.999286215    13    383    383    duplication    1    3.61    503    646    1.28    Gene5
6    S12.Run.variant_ready    0.999286215    13    388    388    deletion    1    2.8    45    24    0.533    Gene6

while read ID SAMPLE; do echo "$SAMPLE" > "$SAMPLE"; done < result.txt

while read ID SAMPLE DATA
do
   outfile="${SAMPLE%%.*}"              Chop off everything after the first full-stop to decide the file name
   echo "$DATA" >> "$outfile"           Quoted in case the line we have has spaces in.
done < result.txt

while read ID SAMPLE DATA
do
   outfile="${SAMPLE%%.*}"              
   echo  "$ID\t$SAMPLE\t$DATA" >> "$outfile"           
done < result.txt

awk 'NR > 1 {split ($2, T, "\."); print $0 > (T[1] ".txt")}' file

awk 'NR > 1 {split ($2, T, "\\."); print $0 > (T[1] ".txt")}' file

awk: cmd. line:1: warning: escape sequence `\.' treated as plain `.'