.
.
ATOM 8 O2' U A 5 135.452 109.687 7.148 1.00 48.99 A16S
ATOM 9 C1' U A 5 135.282 111.512 5.641 1.00 48.99 A16S
ATOM 10 N1 U A 5 134.647 112.595 6.411 1.00106.22 A16S
ATOM 11 C2 U A 5 135.070 112.783 7.722 1.00106.22 A16S
ATOM 12 O2 U A 5 135.933 112.100 8.250 1.00106.22 A16S
.
.
-----------------------------
The problem with the file is the lack of space between columns 10 and 11 in certain rows (underlined) which is making parsing a bit difficult.
I used sed to insert space between these fields using this command-
Code:
sed 's/1.00\([0-9]\).*\.[0-9]\{2\}/1.00 [0-9].*\.[0-9]\{2\}/' file.txt
but the output i got was-
--------------------------------
Code:
ATOM 12 O2 U A 5 135.933 112.100 8.250 1.00 [0-9].*.[0-9]{2} A16S
ATOM 12 O2 U A 5 135.933 112.100 8.250 1.00 [0-9].*.[0-9]{2} A16S
ATOM 12 O2 U A 5 135.933 112.100 8.250 1.00 [0-9].*.[0-9]{2} A16S
---------------------------
I am relatively new to sed/awk. Please suggest a way to go about it.
Thanks,
Last edited by Scrutinizer; 05-12-2017 at 08:53 PM..
Reason: code tags
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05-12-2017
