10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
2. Shell Programming and Scripting
I am trying to use bash to automate the scan of a specific directory using clamav. Having this in place is a network requirement. The below is an attempt to:
1. count the extensions (.txt, .jpeg) in a directory and write them to a virus-scan.log (section in bold)
2. scan each folder in the... (6 Replies)
Discussion started by: cmccabe
6 Replies
3. Shell Programming and Scripting
In the bash below the oldest folder in a directory is selected. If there are 3folders in the directory /home/cmccabe/Desktop/NGS/test and nothing is done to them (ie. no files deleted, renamed) then the bash correctly identifies f1 as the oldest. However, if something is done to the folder then... (4 Replies)
Discussion started by: cmccabe
4 Replies
4. Shell Programming and Scripting
The below bash is trying to list the folders in a specific directory. It seems close but adds the path to the filename, which basename could strip off I think, but not sure why it writes the text file created? This list of folders in the directory will be used later, but needs to only be the... (5 Replies)
Discussion started by: cmccabe
5 Replies
5. UNIX for Beginners Questions & Answers
How do I use grep to select words that start with I or O, end in box, and contain at least one letter in between them?
the text file mailinfo.txt contains
Inbox
the Inbox
Is a match box
Doesn't match
INBOX
Outbox
Outbox1
InbOX
Ibox
I box
If the command works correctly it... (4 Replies)
Discussion started by: steezuschrist96
4 Replies
6. Shell Programming and Scripting
In the bash below I am asking the user for a panel and reading that into bed. Then asking the user for a file and reading that into file1.Is the grep in bold the correct way to apply the selected panel to the file? I am getting a syntax error. Thank you :)
... (4 Replies)
Discussion started by: cmccabe
4 Replies
7. Shell Programming and Scripting
The `bash` below uses the oldest folder in the specified directory and logs it. The goes though an analysis process and creates a log. My problem is that if there are 3 folders in the directory folder1,folder2,folder3, the bash is using folder2 for the analysis eventhough folder1 is the oldest... (0 Replies)
Discussion started by: cmccabe
0 Replies
8. Shell Programming and Scripting
I am trying to select a file in bash and save it to a directory. The below does run but no selected file is saved. Thank you :).
bash
# select file
printf "please select a file to analyze with entered gene or genes \n"
select file in $(cd... (4 Replies)
Discussion started by: cmccabe
4 Replies
9. Shell Programming and Scripting
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
Discussion started by: cmccabe
1 Replies
10. Solaris
Hello Team,
I have Solaris 10 u6
I have a user test1 using bash that belong to the group staff.
I would like to restrict this user to navigate only in his home directory and his subfolders but not not move out to other directories.
How can I do it ?
Thanks in advance (1 Reply)
Discussion started by: csierra
1 Replies