Proper way to use a path with spaces in the directory name


 
Thread Tools Search this Thread
Top Forums Shell Programming and Scripting Proper way to use a path with spaces in the directory name
# 1  
Old 12-22-2015
Proper way to use a path with spaces in the directory name

I am using the below bash loop:

Code:
or f in /media/cmccabe/My Book Western Digital/10_29and30_2015/*.bam ; do
    bname=`basename $f`
    pref=${bname%%.bam}
    samtools view -H $f | sed '/^@PG/d' | samtools reheader - $f > /home/cmccabe/Desktop/NGS/${pref}_newheader.bam
done

is the proper way to escape the spaces in My\ Book\ Western\ Digital to put backslashes in it? Thank you Smilie.
# 2  
Old 12-22-2015
Yes, or use quotes (have the spaces and special characters inside quotes, and have the wildcards like * outside).
Code:
for f in "/media/cmccabe/My Book Western Digital/10_29and30_2015/"*.bam ; do

Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. UNIX for Beginners Questions & Answers

What is the difference ../directory path and ./directory path in ksh?

What is the difference ../directory path and ./directory path in ksh? (1 Reply)
Discussion started by: TestKing
1 Replies

2. UNIX for Beginners Questions & Answers

Convert Relative path to Absolute path, without changing directory to the file location.

Hello, I am creating a file with all the source folders included in my git branch, when i grep for the used source, i found source included as relative path instead of absolute path, how can convert relative path to absolute path without changing directory to that folder and using readlink -f ? ... (4 Replies)
Discussion started by: Sekhar419
4 Replies

3. UNIX for Dummies Questions & Answers

Extract directory name from the full directory path in UNIX using shell scripting

My input is as below : /splunk/scrubbed/rebate/IFIND.REBTE.WROC.txt /splunk/scrubbed/rebate/IFIND.REBTE.WROC.txt /splunk/scrubbed/loyal/IFIND.HELLO.WROC.txt /splunk/scrubbed/triumph/ifind.triumph.txt From the above input I want to extract the file names only . Basically I want to... (5 Replies)
Discussion started by: IshuGupta
5 Replies

4. Shell Programming and Scripting

Conduct a search or test -f over a path with spaces

I am organizing my music library on a NAS server. I want to print a list of all the directories that are missing the cover art (at least one or more jpeg file). I have successfully created a file with each line containing the path to each occurance of one or more .mp3 files. That path is also... (2 Replies)
Discussion started by: godfreydanials
2 Replies

5. Shell Programming and Scripting

Problem with spaces in the path

Hi all, I have a variable test has the following value assigned.. could you please help on doing cd or ls to the value in the varible ... $echo $test /bdm/sdd/compounds/AD4833XT/requests/clin/Watson_20090420/docs/MHRA\ Comments\ \&\ Responses $cd $test ksh: cd: bad argument count $cd... (3 Replies)
Discussion started by: firestar
3 Replies

6. Shell Programming and Scripting

Retrieve directory path from full file path through sh

Hi, I have a file abcd.txt which has contents in the form of full path file names i.e. $home> vi abcd.txt /a/b/c/r1.txt /q/w/e/r2.txt /z/x/c/r3.txt Now I want to retrieve only the directory path name for each row i.e /a/b/c/ /q/w/e/ How to get the same through shell script?... (7 Replies)
Discussion started by: royzlife
7 Replies

7. Shell Programming and Scripting

Problem iterating through PATH entries with spaces

I have a Bash script on Cygwin that tries to iterate through the directory entries in PATH. I need to convert the PATH value to a form that I can iterate through with "for var in $list; do". For instance, an excerpt from my PATH value is this: :/c/Program Files/Windows Imaging/:/c/Program... (2 Replies)
Discussion started by: dkarr
2 Replies

8. UNIX for Dummies Questions & Answers

Best and Proper Permissions Settings for Directory

I am interested in knowing the proper, yet security-conscious settings for a directory. Here's my scenario: 1. I have a username for FTP access to my server called "user". 2. For the purpose of the scenario, PHP runs as "nobody" on my server. 3. I have a directory off the document... (0 Replies)
Discussion started by: Dr. DOT
0 Replies

9. Shell Programming and Scripting

unix shell and getting proper directory

I am deploying a shell script in korn shell that will be called from a cronjob. It has to call other scripts in the same directory. However, the directory will change from server to server. The directories are not in my path and I cannot change that. Is there an easy way to set a variable... (4 Replies)
Discussion started by: guessingo
4 Replies

10. UNIX for Dummies Questions & Answers

Problem with spaces in directory path

Hi Gurus, I have a requirement. cat /usdd/Sample/"NDDF Plus DB"/"NDDF Descriptive and Pricing"/"NDDF BASICS 3.0"/"Pricing"/1.txt | sed 's/*|*/|/g' | sed 's/^*//'| sed 's/^*//; s/*$//' > temp.txt In unix prompt the above command is reading the file 1.txt and I am... (1 Reply)
Discussion started by: prabhutkl
1 Replies
Login or Register to Ask a Question