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Match text from file 1 to file 2 and return specific text

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# 1  
Old 06-11-2015
Match text from file 1 to file 2 and return specific text
I hope this makes sense and is possible.

I am trying to match $1 of panel_genes.txt with $3 of RefSeqGene.txt and when a match is found the value in $6 of RefSeqGene.txt

Example: ACTA2 is $1 of panel_genes.txt

Code:
ACTA2     NM_001613.2
ACTA2     NM_001141945.1

Code:
awk 'FNR==NR { E[$1]=$3 ; next }
{$6=$1} 1' panel_genes.txt RefSeqGene.txt > update.txt

panel_genes.txt (662 Bytes) 
RefSeqGene.txt (999.2 KB) 
# 2  
Old 06-11-2015
panel_genes.txt has only one field, so E[$1]=$3 in your snippet can't work.
# 3  
Old 06-11-2015
what would you recommend, I tried a few different ways and am not getting the desired result. Thank you Smilie.
# 4  
Old 06-11-2015
Looks like your sample output is using field $5 from RefSeqGene.txt not $6. Assuming your sample output is what you require try:

Code:
awk 'FNR==NR {E[$1]; next }
$3 in E {print $3, $5}' panel_genes.txt RefSeqGene.txt > update.txt

This User Gave Thanks to Chubler_XL For This Post:
cmccabe
# 5  
Old 06-12-2015
Thank you, works perfect Smilie.
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