10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Ubuntu, Bash 4.3.48
Hi,
I have this input file with many columns separated with ":"
ARC=121:ERF=12244:IDE=2334:ADA=34 ....
ERF=124:ARC=123:IDE=2344:ADA=54 ....
ERF=16254:IDE=2434:ADA=78:ARC=134 ....
and I want this:
ARC=121:IDE=2334
ARC=123:IDE=2344
ARC=134:IDE=2434
I need to... (5 Replies)
Discussion started by: echo manolis
5 Replies
2. Shell Programming and Scripting
Hello,
I have some text data that is in the form of multi-line records. Each record ends with the string $$$$ and the next record starts on the next line.
RDKit 2D
15 14 0 0 0 0 0 0 0 0999 V2000
5.4596 2.1267 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 ... (5 Replies)
Discussion started by: LMHmedchem
5 Replies
3. Shell Programming and Scripting
I am trying to use awk skip each line with a ## or # and check each line after for STB= and if that value in greater than or = to 0.8, then at the end of line the text "STRAND BIAS" is written in else "GOOD".
So in the file of 4 entries attached.
awk tried:
awk NR > "##"' "#" -F"STB="... (6 Replies)
Discussion started by: cmccabe
6 Replies
4. Shell Programming and Scripting
Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :).
file
chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1
chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7
chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8... (3 Replies)
Discussion started by: cmccabe
3 Replies
5. Shell Programming and Scripting
I am trying to use awk to print the unique entries in $2
So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output.
File.txt
chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807... (5 Replies)
Discussion started by: cmccabe
5 Replies
6. Shell Programming and Scripting
Hi,
I'm using awk to print columns from a tab delimited text file:
awk '{print " "$2" "$3" $6"}' file
The problem I have is column 6 contains text with spaces etc which means awk only prints the first word.
How can I tell awk to print the whole column content as column 6?
Thanks, (10 Replies)
Discussion started by: keenboy100
10 Replies
7. Shell Programming and Scripting
Can I do this in one awk session. Solution I have is poor.
I want to return the number after PID.
echo "Start: 12345 is used by PID:11111 username" | awk -F: '{print $3}' | awk '{print $1}' (6 Replies)
Discussion started by: u20sr
6 Replies
8. Shell Programming and Scripting
hi all
I would like to help me find the problem with this script to find and print to the screen a specific date of a log file that I have on my server, the date it is received as the first argument in the script $ 1
Here I show you a few lines that made the idea of my log file:
****... (4 Replies)
Discussion started by: gilmore666
4 Replies
9. Shell Programming and Scripting
Can any one help us in finding the the last word of each line from a text file and print it.
eg:
1st --> aaa bbbb cccc dddd eeee ffff ee
2nd --> aab ered er fdf ere ww ww f
the o/p should be a below.
ee
f (1 Reply)
Discussion started by: naveen_sangam
1 Replies
10. UNIX for Dummies Questions & Answers
Hi,
I need to find a string, if it finds then I need to print it , otherwise it has to goto next line....
input is====>
uid = shashi, india uid ,uid= asia
uid= none, uid=india. none
==========
output shold be
uid = shashi, india
uid ,
uid= asia
uid= none,
uid=india. none
... (1 Reply)
Discussion started by: hegdeshashi
1 Replies