10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the bash menu below if the variant that is inputted is in the format NM_004004.3:c.274G>T the below works perfectly. My question is if the variant inputted isNM_004004.3:-c.274G>T or NM_004004.3:+c.274G>T then the code as is will throw an error due to a biological issue. Is it possible to to... (1 Reply)
Discussion started by: cmccabe
1 Replies
2. Shell Programming and Scripting
The below awk parser works for most data inputs, but I am having trouble with the last one. The problem is in the below rules steps 1 and 2 come from $2 (NC_000013.10:g.20763686_20763687delinsA) and steps 3 and 4 come from $1 (NM_004004.5:c.34_35delGGinsT).
Parse Rules:
The header is... (0 Replies)
Discussion started by: cmccabe
0 Replies
3. Shell Programming and Scripting
Hi. Let me start saying that i am kinda new to bash, and have few skills in programming. I've been advised to use bash to manipulate large .csv files. I've been able to do some data filtering using fors, grep and tail commands. That was kinda easy seeing examples. But now i need to do some hard... (1 Reply)
Discussion started by: jmarmitt
1 Replies
4. Shell Programming and Scripting
I made menu script for users so they can run other script without going in shell just from menu.
But i must control their input.
These are criteria:
Input must have 4 signs
First two signs are always lower case letters
Input shall not have some special signs just letters and numbers
... (1 Reply)
Discussion started by: waso
1 Replies
5. Shell Programming and Scripting
Hi all,
I have a file with some module names as below.
Font::AFM
Data::Grove ---> libxml-perl
Net::LDAP ---> perl-ldap
DBI
XML
....
...
....
and so on ...
The file has some lines with the character " -->" .
Now how can I cut only the last column of the line wherever "-->" is... (4 Replies)
Discussion started by: vijaya2006
4 Replies
6. Shell Programming and Scripting
hi guys,
i want to parse a file using public function, the file contain raw data in the below format i want to get the output like this to load it to Oracle DB
MARWA1,BSS:26,1,3,0,0,0,0,0.00,22,22,22.00
MARWA2,BSS:26,1,3,0,0,0,0,0.00,22,22,22.00
this the file raw format:
Number of... (6 Replies)
Discussion started by: dagigg
6 Replies
7. Shell Programming and Scripting
hello,
How to parse a file to see if a specific line is commented by '#' character?
filename: file1
cat file1
...
# /usr/bin/whatever
...
thank you (9 Replies)
Discussion started by: melanie_pfefer
9 Replies
8. UNIX for Dummies Questions & Answers
hello all
i have a big problems for me
if i have more files as example
test.ghrt.part01.rar
test.ghrt.part02.rar
test.ghrt.part03.rar
test.ghrt.part04.rar
test.ghrt.part05.rar
test.ghrt.part06.rar
test.ghrt.part07.rar
test.ghrt.part08.rar
test.ghrt.part09.rar
test.ghrt.part10.rar... (13 Replies)
Discussion started by: ateya
13 Replies
9. SCO
Hi Gurus,
I had a question regarding avoiding duplicates.i have a file abc.txt
abc.txt
-------
READER_1_1_1> HIER_28056 XML Reader: Error occurred while parsing:; line number ; column number
READER_1_3_1> Sun Mar 23 23:52:48 2008
READER_1_3_1> HIER_28056 XML Reader: Error occurred while... (0 Replies)
Discussion started by: pssandeep
0 Replies
10. UNIX for Dummies Questions & Answers
Hello,
Today, as a root user, i want to copy recursively all files and diretories in a source directory to a destination directory using the following command,
cp -r /home/smith/* /home/bob/
However, I carelessly missed the '*' out when I executed the command.
Now, i noticed a... (1 Reply)
Discussion started by: cy163
1 Replies