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Match partial text

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# 8  
Old 03-10-2015
It works great, I am just trying to have the combined.txt be the values in the output sheet combined (..... ref and .....antiref) and the chromosome matched. This way the row space between them can be removed. Thank you very much Smilie.

HTML Code:
 current combined.txt
DTE3504500000001ref         1
DTE3504500000001antiref   "space"
DTE3504500000002ref         1
DTE3504500000002antiref   "space"
HTML Code:
 Desired combined.txt
1     DTE3504500000001
1     DTE3504500000002 
1     DTE3504500000003
Thank you for your help Smilie.

---------- Post updated 03-10-15 at 10:49 AM ---------- Previous update was 03-09-15 at 12:16 PM ----------

Is this possible to do using awk, I don't always trust the output of excel. Thank you Smilie.

---------- Post updated at 11:49 AM ---------- Previous update was at 10:49 AM ----------

Maybe something like:

Code:
 awk 'NF == 2 {T[$2]=$1; next} {print $0, T[$5]}' FS="\t" OFS="\t" name.txt output.txt > combined.txt | awk 'NF' combined.txt >combined2.txt

Not sure if thats right but I hope I am learning slowly. Thank you Smilie.
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