10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
hi all,
trying this using shell/bash with sed/awk/grep
I have two files, one containing one column, the other containing multiple columns (comma delimited).
file1.txt
abc12345
def12345
ghi54321
...
file2.txt
abc1,text1,texta
abc,text2,textb
def123,text3,textc
gh,text4,textd... (6 Replies)
Discussion started by: shogun1970
6 Replies
2. Shell Programming and Scripting
The below bash connects to a site, downloads a file, searches that file based of user input - could be multiple (all that seems to work). What I am not able to figure out is how to display on the screen match found or no match found" and write a file to a directory (C:\Users\cmccabe\Desktop\wget)... (4 Replies)
Discussion started by: cmccabe
4 Replies
3. Shell Programming and Scripting
I'm trying to pull an image source url from a html source file. I'm new with regex. I'm in BaSH. I've tried grep -E 'http.*jpg' file which highlights the text, but gives me 2 problems:
1) Results aren't stand alone and can't be piped to another command. (I believe it includes everything in... (5 Replies)
Discussion started by: amx401
5 Replies
4. UNIX for Dummies Questions & Answers
I need to search a string for some specific text which is no big deal using grep. My problem is when the search fails to find the text. I need to add text like "na" when my search does not match.
I have tried this command but it does not work when I put the command in a loop in a bash script:
... (12 Replies)
Discussion started by: jojojmac5
12 Replies
5. Shell Programming and Scripting
Trying to match $4 in LCH_exons.txt with $1 in refseq_genes.txt, if there is a match then the value in $4 in refseq_exons is copied to $5 of LCH_exons.
For example, $4 in LCH_exons.txt is NRAS and that matches $1 row 11270 and the value in $4 is -, so the - would be copied to LCH_exons.txt in... (5 Replies)
Discussion started by: cmccabe
5 Replies
6. Shell Programming and Scripting
In the files attached, I am trying to:
if Files.txt $1 is in the range of Exons.txt $1, then in Files.txt $4 the value from Exons.txt $3 is copied else if no match is found Exons.txt $3 = "Intron"
For example, the first value in File.txt $1 is chr1:14895-14944 and is not found in any range... (4 Replies)
Discussion started by: cmccabe
4 Replies
7. Shell Programming and Scripting
I am trying to sort the following files from folder Bag to Apple, Cat Food, Dog Food. I can get all of the files I want into a new folder, but not sure of the best approch to get them to their final directory
My Files
==========
apple.1234.ext
apple.1235.ext
cat food 101.ext
Cat Food... (2 Replies)
Discussion started by: mtschroeder
2 Replies
8. UNIX for Dummies Questions & Answers
My current issue is dealing with two space delimited files.
The first file has column 1 as the sample ID's, then columns 2 - n as the observations. The second file has column 1 as the sample ID's, column 2 as the mother ID's, column 3 as the father ID's, column 4 as the gender, and column 5... (3 Replies)
Discussion started by: Renyulb28
3 Replies
9. UNIX for Advanced & Expert Users
Hi,
I have particular set of files which have the below contents:
****** PBX TYPE:ID6 PBX-id: A11 rolled on 123456 368763 00 >>>>>>
A11,2008-07-01 21:31:00.000,42,42112, ,XXXXXXXX
A11,2008-07-01 21:40:00.000,6, , ,XXXXXXX
A12,2008-07-01 21:53:00.000,68, , ,XXXXXXXX... (12 Replies)
Discussion started by: bsandeep_80
12 Replies
10. Shell Programming and Scripting
Dear experts,
i want to search pattern tre and copy this line and above two lines
in a seperate file::
Thanks for the help
SEV="MAJOR": RX-TX HW-FAILURE DOMAIN="alcomc2_BSS_20
unit-type % bts nbr % 24
SBL-type % tre nbr % 4 subnb % 255
BR,
Danish (16 Replies)
Discussion started by: Danish Shakil
16 Replies