10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi,
I need help to match patterns from between two different files and extract region of strings.
inputfile1.fa
>l-WR24-1:1
GCCGGCGTCGCGGTTGCTCGCGCTCTGGGCGCTGGCGGCTGTGGCTCTACCCGGCTCCGG
GGCGGAGGGCGACGGCGGGTGGTGAGCGGCCCGGGAGGGGCCGGGCGGTGGGGTCACGTG... (4 Replies)
Discussion started by: bunny_merah19
4 Replies
2. Shell Programming and Scripting
Input: START
OS:: UNIX
Release: xxx
Version: xxx
END
START
OS:: LINUX
Release: xxx
Version: xxx
END
START
OS:: Windows
Release: xxx
Version: xxx
ENDHere i am trying to get all the information between START and END, only if i could match OS Type.
I can get all the data between the... (3 Replies)
Discussion started by: Dharmaraja
3 Replies
3. Shell Programming and Scripting
In the files attached, I am trying to:
if Files.txt $1 is in the range of Exons.txt $1, then in Files.txt $4 the value from Exons.txt $3 is copied else if no match is found Exons.txt $3 = "Intron"
For example, the first value in File.txt $1 is chr1:14895-14944 and is not found in any range... (4 Replies)
Discussion started by: cmccabe
4 Replies
4. Shell Programming and Scripting
Hi,
I'm trying to match a filename that could be called anything from vout001 to vout252 and was trying to do a small test but I'm not getting the result I thought I would..
Can some one tell me what I'm doing wrong?
*****@********>echo $mynumber ... (4 Replies)
Discussion started by: Jazmania
4 Replies
5. UNIX for Dummies Questions & Answers
I have a file which has collection of segments occuring n(For eg.100) times
ISA
GS
ST
NM1*85
N3
N4
NM1*IL
N3
N4
REF*D9*1001
ISE
GE
SE
ISA
GS
ST
NM1*85
N3 (13 Replies)
Discussion started by: nsuresh316
13 Replies
6. Shell Programming and Scripting
Hello,
I have a text file with lines that look like this:
1974 12 27 -0.72743 -1.0169 2 1.25029
1974 12 28 -0.4958 -0.72926 2 0.881839
1974 12 29 -0.26331 -0.53426 2 0.595623
1974 12 30 7.71432E-02 -0.71887 3 0.723001
1974 12 31 0.187789 -1.07114 3 1.08748
1975 1 1 0.349933 -1.02217... (2 Replies)
Discussion started by: meridionaljet
2 Replies
7. Shell Programming and Scripting
Hi Everyone,
Here's a snippet of my data:
File 1 = testRef2:
A1BG - 13208 13284
AAA1 - 34758475 34873943
AAAS - 53701240 53715412File 2 = 42MLN.3.bedS2:
13208
13208
13360
13363
13484
13518
13518My awk script:
awk 'NR == FNR{a=$1;next} {$1>=a}{$1<=a}{print... (5 Replies)
Discussion started by: heecha
5 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I have a query about joining files using data ranges.
Example files below - I want to join file1 to file2 with matches where file1 column 1 is equal to file2 column1, and file1 column 2 is within the range of file2 columns 3 and 4. I would like rows which don't match to be printed too.
... (4 Replies)
Discussion started by: auburn
4 Replies
9. Shell Programming and Scripting
if the column1 and 2 in both files has same key (for example "a" and "a1") compare each first key value(a1 of a) of input2 (for example 1-4 or 65-69 not 70-100 or 44-40 etc) with all the values in input1.
if the range of first key value in input2 is outof range in input1 values named it as out... (54 Replies)
Discussion started by: repinementer
54 Replies
10. Shell Programming and Scripting
Hello all,
I would like a bit of help with a problem I am having. I have the following example file:
$ cat test_hosts
10.10.2.3 host1
10.10.2.4 host2
10.10.2.130 host3
10.10.2.5 host4
10.10.2.230 host5
10.10.2.22 host6
I need to match all IP addresses in the 10.10.2.1-10.10.2.22... (5 Replies)
Discussion started by: sylaan
5 Replies