9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a fasta file as follows
>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3
MMLQHLVIFCLGLVVQNFCSPAETTGQARRCDRKSLLTIRTECRSCALNLGVKCPDGYTM
ITSGSVGVRDCRYTFEVRTYSLSLPGCRHICRKDYLQPRCCPGRWGPDCIECPGGAGSPC
NGRGSCAEGMEGNGTCSCQEGFGGTACETCADDNLFGPSCSSVCNCVHGVCNSGLDGDGT... (3 Replies)
Discussion started by: jerrild
3 Replies
2. Shell Programming and Scripting
I have a fasta file as follows
>sp|O15090|FABP4_HUMAN Fatty acid-binding protein, adipocyte OS=Homo sapiens GN=FABP4 PE=1 SV=3
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
KGVTSTRVYERA
>sp|L18484|AP2A2_RAT AP-2... (3 Replies)
Discussion started by: alexypaul
3 Replies
3. UNIX for Dummies Questions & Answers
Hi All,
i worte a shell script which will zcat the .gz file and write it in to a tmp file and then again cat the file and convert it to Dos mode. Next step is i am greping the file to search for the particular string on the 1st line and if the string does not exits it will insert the 1st line... (1 Reply)
Discussion started by: vikatakavi
1 Replies
4. UNIX for Dummies Questions & Answers
salary_range_report()
{
echo -e ${underline}$redYellow"\nSalary Range Report\n"
tput sgr0
count_0_to_999=0
count_1000_to_2999=0
count_2000_to_5999=0
count_6000_to_9999=0
count_10000_above=0
for i in `cut -d "," -f4 $PAYROLL` #Loop Salary
do
if &&
then
let... (4 Replies)
Discussion started by: eggisbad
4 Replies
5. Shell Programming and Scripting
Hi,
I have a fixed width file.
The way this file works is say for example there are 30 columns in it each with different sizes say 10,5,2, etc...
If data in a field is less than the field size the rest of it is loaded with spaces.
I would like an awk command to that would replace
I have... (8 Replies)
Discussion started by: pinnacle
8 Replies
6. Shell Programming and Scripting
Hopefully someone here can point me in the correct direction.
I'm working on a username migration and am trying to map my users ols usernames to the new ones.
Right now every user has a username of firstname.lastname i.e. john.doe
I'm trying to create a bash or python script that will take... (3 Replies)
Discussion started by: binary-ninja
3 Replies
7. Shell Programming and Scripting
Hello all,
Here is what my bash script does: sums number columns, saves the tot in new column, outputs if tot >= threshold val:
> cat getnon0file.sh
#!/bin/bash
this="getnon0file.sh"
USAGE=$this"
InFile="xyz.38"
Min="0.05"
#
awk '{sum=0; for(n=2; n<=NF; n++){sum+=$n};... (4 Replies)
Discussion started by: catalys
4 Replies
8. Shell Programming and Scripting
I have a file that is a log file for web traffic. I would like to convert the timestamp in it to unix time or epoch time.
I am using the date command in conjunction with awk to try to do this. Just
myfile:
28/Aug/1995:00:00:38 1 /pub/atomicbk/catalog/home.gif 813
28/Aug/1995:00:00:38 1... (3 Replies)
Discussion started by: jontjioe
3 Replies
9. Shell Programming and Scripting
My satellite receiver is equipped with busybox, so a small linux version.
That is why I can not use certain commands like #tomorrow in date commands or #date -d "+1 day"
and thus I have to use: day1=$
I want to download every day 6 files from the internet but the filenames consist of the date... (6 Replies)
Discussion started by: ni_hao
6 Replies